View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_45 (Length: 375)
Name: NF1272_low_45
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_45 |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 10250789 - 10251162
Alignment:
| Q |
1 |
tttacatatatttaaatataagtcacaaacatcacctataacatgtgtacaagaagaaattaacctaacacaatataatcataggaagtatactgaaaaa |
100 |
Q |
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| T |
10250789 |
tttacatatatttaaatataagtcacaaa-atcacctataacatgtgtacaagaagaaattaacctaacacaatagaatcataggaagtatactaaaaaa |
10250887 |
T |
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| Q |
101 |
caagaaaacaacaaatgaagggaacaaataagaggatgaagaagggttaatttgaataataaaatcacaagtaggagttgaaatattatttgttgtaagc |
200 |
Q |
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| T |
10250888 |
caagaaaacaacaaatgaagggaacaaagaagaggatgaagaagggttaatttgaataataaaatcacaagtaggagttgaaatattatttgttgtaagc |
10250987 |
T |
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| Q |
201 |
atagctaacccttcaaaattgcaagccaagtcattctgattttgcacttgataatacatattaaatgcatatgaagcatttccattagcatccaaattgt |
300 |
Q |
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| T |
10250988 |
atagctaacccttcaaaattgcaagccaagtcattctgattttgcacttgataatacatattaaatgcatatgaagcatttccattagcatccaaattgt |
10251087 |
T |
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| Q |
301 |
tgcaagatgatccatatccaagtggggtgcaatcagcaaaagtgcaagcataattaatattatctgcaaggttgc |
375 |
Q |
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| T |
10251088 |
tgcaagatgatccatatccaagtggggtgcaatcagcaaaagtgcaagcataattaatattatctgcaaggttgc |
10251162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 98 - 375
Target Start/End: Complemental strand, 33065876 - 33065599
Alignment:
| Q |
98 |
aaacaagaaaacaacaaatgaagggaacaaataagaggatgaagaagggttaatttgaataataaaatcacaagtaggagttgaaatattatttgttgta |
197 |
Q |
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| T |
33065876 |
aaacaacaaagcagcaaatgagggcatcaaagaagatgctgaagaagggactatttggatgataaaattgcaagtaggtgttgaaatgttgtctgtagta |
33065777 |
T |
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| Q |
198 |
agcatagctaacccttcaaaattgcaagccaagtcattctgattttgcacttgataatacatattaaatgcatatgaagcatttccattagcatccaaat |
297 |
Q |
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|| ||||||| |||||||||||||| || || |||||| ||| || || ||||| || |||||||| |||||||||||||||||||| | | |
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| T |
33065776 |
ggcttagctaaaccttcaaaattgcacgcttgacgatcctgattctgcgtctggtagtacatgttgaatgcataagaagcatttccattagcatcaaggt |
33065677 |
T |
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| Q |
298 |
tgttgcaagatgatccatatccaagtggggtgcaatcagcaaaagtgcaagcataattaatattatctgcaaggttgc |
375 |
Q |
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| T |
33065676 |
tgttgcaagaagatccatacccaagtgcggtacaatctccaaaggtgcaagcaaagttaatgttatcagcaagtttgc |
33065599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 234 - 280
Target Start/End: Complemental strand, 46353914 - 46353868
Alignment:
| Q |
234 |
ttctgattttgcacttgataatacatattaaatgcatatgaagcatt |
280 |
Q |
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| T |
46353914 |
ttctgattatgcacttgataatacatattaaatgcataagaagcatt |
46353868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 280
Target Start/End: Complemental strand, 51490381 - 51490349
Alignment:
| Q |
248 |
ttgataatacatattaaatgcatatgaagcatt |
280 |
Q |
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| T |
51490381 |
ttgataatacatattaaatgcatatgaagcatt |
51490349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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