View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_46 (Length: 364)
Name: NF1272_low_46
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 50047478 - 50047834
Alignment:
| Q |
1 |
aactaccatgaaaaatcttcataaaatttaccatagcaaaggttcggacagagctatgaaccaccagatttgtcatgtttccgataatatatgcagtgag |
100 |
Q |
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| T |
50047478 |
aactaccatgaaaaatcttcataaaatttaccatagcaaaggttcggacagagctatgaaccaccagatttgtcatgtttccgataatatatgcagtgag |
50047577 |
T |
|
| Q |
101 |
tccgatgttaaacagcatataaaaaatattgaaaaccttctccgttgtattttctgcatgtaaatctccatagccaacagtggtaagggttacaatagac |
200 |
Q |
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| T |
50047578 |
tccgatgttaaacagcatataaaaaatattgaaaaccttctccgttgtattttctgcatgtaaatctccatagccaacagtggtaagggttacaatagac |
50047677 |
T |
|
| Q |
201 |
caatacatggagtaagtgtaacccgatccgacactcctatgcttaaaatcctctacctgcttcccaatccacgtgtttccgggtgatttgtgatggaaag |
300 |
Q |
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| T |
50047678 |
caatacatggagtaagtgtaacccgatccgacactcctatgcttaaaatcctctacctgcttcccaatccacgtgtttccgggtgatttgtgatggaaag |
50047777 |
T |
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| Q |
301 |
ccaaccaaaaatacacgcagcctgtgaagtgcactgcaaatagcgtaacctatgata |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50047778 |
ccaaccaaaaatacacgcagcctgtgaagtgcactgcaaatagcgtaacctatgata |
50047834 |
T |
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