View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1272_low_48 (Length: 345)

Name: NF1272_low_48
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1272_low_48
NF1272_low_48
[»] chr4 (9 HSPs)
chr4 (101-342)||(26646282-26646523)
chr4 (116-249)||(13683421-13683555)
chr4 (116-249)||(22187897-22188031)
chr4 (148-249)||(26646620-26646721)
chr4 (128-229)||(33078057-33078158)
chr4 (245-337)||(33078298-33078390)
chr4 (116-249)||(13689748-13689867)
chr4 (245-338)||(24409774-24409867)
chr4 (30-68)||(26646184-26646221)
[»] chr8 (7 HSPs)
chr8 (116-247)||(36991690-36991822)
chr8 (245-337)||(34592685-34592777)
chr8 (245-338)||(36996592-36996685)
chr8 (245-338)||(37006425-37006518)
chr8 (116-245)||(36996850-36996968)
chr8 (128-177)||(34592496-34592545)
chr8 (116-159)||(37006690-37006733)
[»] chr7 (1 HSPs)
chr7 (199-249)||(8596620-8596671)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 101 - 342
Target Start/End: Original strand, 26646282 - 26646523
Alignment:
Q  101 aatttgaaagagagaaaagttcacctcaattttattcctgcatccattaaataaataattagaatatgatcagcctgaacagtctactgtatatcaagcc 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26646282 aatttgaaagagagtaaagttcacctcaattttattcctgcatccattaaataaataattagaatatgatcagcctgaacagtctactgtatatcaagcc 26646381  T
Q  201 aaaagcctagcaacactattgtatcacacttttattattaactaattttgctgcagccacaaacagtttctatcaagtagttaacaaaataggaaaaacc 300  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26646382 aaaagcctagcaacactaatgtatcacacttttattattaactaattttgctgcagccacaaacagtttctatcaagtagttaacaaaataagaaaaacc 26646481  T
Q  301 catctatttacagcaaaaatcaagtttaccctttgcttctcc 342  Q
     ||||||||||||||||||||||||||||| |||||||||||    
T  26646482 gatctatttacagcaaaaatcaagtttaccttttgcttctcc 26646523  T

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Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 116 - 249
Target Start/End: Complemental strand, 13683555 - 13683421
Alignment:
Q  116 aaagttcacctcaattttattcctgcatccattaaataaataattagaatatgatcagcctgaacagtctactgtatatcaagccaaaagcctagcaaca 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  13683555 aaagttcacctcaattttattcctgcatccattaaataaataattagaatatgatcagcctgcacagtctactgggtatcaagccaaaagcctagcaaca 13683456  T
Q  216 ctattgtatcacac-ttttattattaactaatttt 249  Q
    |||||||||||||| ||||||||||||||||||||    
T  13683455 ctattgtatcacactttttattattaactaatttt 13683421  T

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Target: chr4; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 116 - 249
Target Start/End: Original strand, 22187897 - 22188031
Alignment:
Q  116 aaagttcacctcaattttattcctgcatccattaaataaataattagaatatgatcagcctgaacagtctactgtatatcaagccaaaagcctagcaaca 215  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  22187897 aaagtttacctcaattttattcctgcatccattaaatagataattagaatatgatcagcctgcacagtctactggatatcaagccaaaagcctagcaaca 22187996  T
Q  216 ctattgtatcacac-ttttattattaactaatttt 249  Q
    |||||||||||||| ||||||||||||||| ||||    
T  22187997 ctattgtatcacactttttattattaactagtttt 22188031  T

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Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 148 - 249
Target Start/End: Original strand, 26646620 - 26646721
Alignment:
Q  148 taaataaataattagaatatgatcagcctgaacagtctactgtatatcaagccaaaagcctagcaacactattgtatcacacttttattattaactaatt 247  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  26646620 taaataaataattagaatatgatcagcctgcacggtctactggatatcaagccaaaagcctaacaacactattgtatcacacttttactattaactaatt 26646719  T
Q  248 tt 249  Q
    ||    
T  26646720 tt 26646721  T

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Target: chr4; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 128 - 229
Target Start/End: Complemental strand, 33078158 - 33078057
Alignment:
Q  128 aattttattcctgcatccattaaataaataattagaatatgatcagcctgaacagtctactgtatatcaagccaaaagcctagcaacactattgtatcac 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||| ||||||||||||||||||||||||||| |||||    
T  33078158 aattttattcctgcatccattaaataaataattagaatatgatcagcctgcacagtctactagataacaagccaaaagcctagcaacactattgcatcac 33078059  T
Q  228 ac 229  Q
    ||    
T  33078058 ac 33078057  T

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Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 245 - 337
Target Start/End: Complemental strand, 33078390 - 33078298
Alignment:
Q  245 attttgctgcagccacaaacagtttctatcaagtagttaacaaaataggaaaaacccatctatttacagcaaaaatcaagtttaccctttgct 337  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||    
T  33078390 attttgctgcagccacagacagtttctatcaagtagttaacaaaataagaaaaacccatctatttacagccaaaatcaagtttaccgtttgct 33078298  T

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Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 116 - 249
Target Start/End: Complemental strand, 13689867 - 13689748
Alignment:
Q  116 aaagttcacctcaattttattcctgcatccattaaataaataattagaatatgatcagcctgaacagtctactgtatatcaagccaaaagcctagcaaca 215  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |               |||||||||||||||||    
T  13689867 aaagttcaccttaattttattcctgcatccattaaataaataattagaatatgatcagcctgcacatt---------------ccaaaagcctagcaaca 13689783  T
Q  216 ctattgtatcacac-ttttattattaactaatttt 249  Q
    |||||||||||||| ||||||||||||||||||||    
T  13689782 ctattgtatcacactttttattattaactaatttt 13689748  T

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Target: chr4; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 245 - 338
Target Start/End: Original strand, 24409774 - 24409867
Alignment:
Q  245 attttgctgcagccacaaacagtttctatcaagtagttaacaaaataggaaaaacccatctatttacagcaaaaatcaagtttaccctttgctt 338  Q
    ||||||||||||||||||||||||||||  ||| |||||||||| || |||||||||||| ||||||||| ||| ||||| ||||| |||||||    
T  24409774 attttgctgcagccacaaacagtttctagtaagcagttaacaaagtaagaaaaacccatccatttacagccaaattcaagattaccgtttgctt 24409867  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 26646184 - 26646221
Alignment:
Q  30 tgtcaaatacaggcaagtccacaattcgaccgctatata 68  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  26646184 tgtcaaatacagg-aagtccacaattcgaccgctatata 26646221  T

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Target: chr8 (Bit Score: 89; Significance: 7e-43; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 116 - 247
Target Start/End: Original strand, 36991690 - 36991822
Alignment:
Q  116 aaagttcacctcaattttattcctgcatccattaaataaataattagaatatgatcagcctgaacagtctactgtatatcaagccaaaagcctagcaaca 215  Q
    ||||||||| | |||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  36991690 aaagttcactttaattttttgcctgcatccattaaataaataattagaatatgatcagcctgcacagtctactggatatcaagccaaaagcctagcaaca 36991789  T
Q  216 ctattgtatcacac-ttttattattaactaatt 247  Q
    || ||| ||||||| |||||||||||| |||||    
T  36991790 ctgttgcatcacactttttattattaagtaatt 36991822  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 245 - 337
Target Start/End: Complemental strand, 34592777 - 34592685
Alignment:
Q  245 attttgctgcagccacaaacagtttctatcaagtagttaacaaaataggaaaaacccatctatttacagcaaaaatcaagtttaccctttgct 337  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||    
T  34592777 atttttctgcagccacaaacagtttctatcaagtagttaacaaaataagaaaaacccatctatttacagccaaaatcaagtttaccgtttgct 34592685  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 245 - 338
Target Start/End: Original strand, 36996592 - 36996685
Alignment:
Q  245 attttgctgcagccacaaacagtttctatcaagtagttaacaaaataggaaaaacccatctatttacagcaaaaatcaagtttaccctttgctt 338  Q
    |||| |||||||||||||||||||||||  |||||||||| |||||| |||||||||||||||||||||| ||||||||||||||| |||||||    
T  36996592 atttagctgcagccacaaacagtttctagtaagtagttaagaaaataagaaaaacccatctatttacagccaaaatcaagtttaccgtttgctt 36996685  T

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Target: chr8; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 245 - 338
Target Start/End: Original strand, 37006425 - 37006518
Alignment:
Q  245 attttgctgcagccacaaacagtttctatcaagtagttaacaaaataggaaaaacccatctatttacagcaaaaatcaagtttaccctttgctt 338  Q
    ||||||||||||||||||||||||||||  |||||| |||||||||| |||||||||||||||||||||| |||||||| |||||| |||||||    
T  37006425 attttgctgcagccacaaacagtttctagtaagtagctaacaaaataagaaaaacccatctatttacagccaaaatcaaatttaccgtttgctt 37006518  T

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Target: chr8; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 116 - 245
Target Start/End: Original strand, 36996850 - 36996968
Alignment:
Q  116 aaagttcacctcaattttattcctgcatccattaaataaataattagaatatgatcagcctgaacagtctactgtatatcaagccaaaagcctagcaaca 215  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||            ||| ||||||||| ||||||||| | |||    
T  36996850 aaagtttacctcaattttattcctgcatccattaaataaataattagaatatgatcagc------------ctggatatcaagcaaaaagcctaccgaca 36996937  T
Q  216 ctattgtatcacac-ttttattattaactaa 245  Q
    |||||||||||||| ||||||||||||||||    
T  36996938 ctattgtatcacactttttattattaactaa 36996968  T

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Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 177
Target Start/End: Complemental strand, 34592545 - 34592496
Alignment:
Q  128 aattttattcctgcatccattaaataaataattagaatatgatcagcctg 177  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  34592545 aattttatgcctgcatccattaaataaataattagaatatgatcagcctg 34592496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 159
Target Start/End: Original strand, 37006690 - 37006733
Alignment:
Q  116 aaagttcacctcaattttattcctgcatccattaaataaataat 159  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  37006690 aaagtttacctcaattttattcctgcatccattaaataaataat 37006733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 8596620 - 8596671
Alignment:
Q  199 ccaaaagcctagcaacactattgtatcacac-ttttattattaactaatttt 249  Q
    ||||||||||||||||||| ||||||||||| ||||||||| ||||||||||    
T  8596620 ccaaaagcctagcaacactgttgtatcacactttttattataaactaatttt 8596671  T

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