View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_55 (Length: 316)
Name: NF1272_low_55
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 66 - 304
Target Start/End: Original strand, 20078396 - 20078635
Alignment:
| Q |
66 |
ttatccacttgatttaatttccaacacaa-agtctcatttgtcttcccataaatagatgtctcgctcattccatttgtgcaaattaaaattcaatccaaa |
164 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20078396 |
ttatccacttgatttaatttccaacacaatagtctcatttgtcttcccataaatagatgtctcgctcattccatttgtgtaaattaaaattcaatccaaa |
20078495 |
T |
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| Q |
165 |
catggcctctacatactcaatactattacttctacttggaatgatgatggttaccactttcgtgggtgccggaaggtttaatatgtttggatatccagat |
264 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
20078496 |
catggcctctacatactcaatagtattacttctacttggaatgatgatggttaccactttcgtgggtgctggaaggtttaatatgtttggatatccagat |
20078595 |
T |
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| Q |
265 |
tattaccctgtagatttagaagatgattggtttgaagtat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
20078596 |
tattaccctgtagatttagaagatgattggtttgaagtat |
20078635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 66 - 299
Target Start/End: Original strand, 20084690 - 20084924
Alignment:
| Q |
66 |
ttatccacttgatttaatttccaacacaa-agtctcatttgtcttcccataaatagatgtctcgctcattccatttgtgcaaattaaaattcaatccaaa |
164 |
Q |
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|||||||||||||||||||||||||| || |||||||| ||| |||| |||||||| | |||||||||||| |||| | |||||||||||| ||||||| |
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| T |
20084690 |
ttatccacttgatttaatttccaacataatagtctcatgtgttttcctataaatagctttctcgctcattctatttatttaaattaaaattcgatccaaa |
20084789 |
T |
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| Q |
165 |
catggcctctacatactcaatactattacttctacttggaatgatgatggttaccactttcgtgggtgccggaaggtttaatatgtttggatatccagat |
264 |
Q |
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||||||||||||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||| |
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| T |
20084790 |
catggcctctacatattcaatagtattacttctacttgaaatgatgatggttaccactttcgtgggtgctggaaagtctaatatgtttggatatccagat |
20084889 |
T |
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| Q |
265 |
tattaccctgtagatttagaagatgattggtttga |
299 |
Q |
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| ||||| |||||| |||||| |||||| |||| |
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| T |
20084890 |
caatacccagtagatccagaagacgattggattga |
20084924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 66 - 299
Target Start/End: Original strand, 20071377 - 20071611
Alignment:
| Q |
66 |
ttatccacttgatttaatttccaacacaa-agtctcatttgtcttcccataaatagatgtctcgctcattccatttgtgcaaattaaaattcaatccaaa |
164 |
Q |
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||||||| ||||||| ||||||||||||| | |||||| ||| ||| |||||||| |||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
20071377 |
ttatccatttgatttcatttccaacacaataatctcatgtgttttcttataaatagctgtctcgctcattccatttgtgtaaattaaaattcgatccaaa |
20071476 |
T |
|
| Q |
165 |
catggcctctacatactcaatactattacttctacttggaatgatgatggttaccactttcgtgggtgccggaaggtttaatatgtttggatatccagat |
264 |
Q |
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||||||||||||||||||| || |||||||||||||||||| |||| ||||||||||| |||||||||| |||| | |||||||||||||||||||||| |
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| T |
20071477 |
catggcctctacatactcattagtattacttctacttggaacgatggtggttaccactgtcgtgggtgctcgaagatctaatatgtttggatatccagat |
20071576 |
T |
|
| Q |
265 |
tattaccctgtagatttagaagatgattggtttga |
299 |
Q |
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|||||||| | || ||||||| ||||||||||| |
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| T |
20071577 |
tattacccatttgagctagaagaagattggtttga |
20071611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 87 - 267
Target Start/End: Original strand, 20097395 - 20097575
Alignment:
| Q |
87 |
caacacaa-agtctcatttgtcttcccataaatagatgtctcgctcattccatttgtgcaaattaaaattc-aatccaaacatggcctctacatactcaa |
184 |
Q |
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|||||||| |||||||| ||| |||| |||||||| |||||||||||||||||||||| |||| |||||| | | ||||||||||||||||||||||| |
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| T |
20097395 |
caacacaatagtctcatgtgttttcctataaatagctgtctcgctcattccatttgtgtaaat--aaattcgattaaaaacatggcctctacatactcaa |
20097492 |
T |
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| Q |
185 |
tactattacttctacttggaatgatgatggttaccactttcgtgggtgccggaaggtttaatatgtttggatatccagattat |
267 |
Q |
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|| ||||||||||| ||||||||||||||||||||||| |||||||||| ||||| | ||||||| ||||| ||||||||||| |
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| T |
20097493 |
tagtattacttctatttggaatgatgatggttaccactgtcgtgggtgcgggaagatctaatatgattggacatccagattat |
20097575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 108 - 267
Target Start/End: Original strand, 20116033 - 20116192
Alignment:
| Q |
108 |
ttcccataaatagatgtctcgctcattccatttgtgcaaattaaaattcaatccaaacatggcctctacatactcaatactattacttctacttggaatg |
207 |
Q |
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|||| |||||||| ||||| ||| ||||||| || ||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20116033 |
ttcctataaatagttgtcttgcttgttccattaatgtgaatcaaaattcgataaaaacatggcctctacatactcaatagtattacttctacttggaatg |
20116132 |
T |
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| Q |
208 |
atgatggttaccactttcgtgggtgccggaaggtttaatatgtttggatatccagattat |
267 |
Q |
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||||||||||||||| |||||||||| ||| || |||||||||||||||| |||||||| |
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| T |
20116133 |
atgatggttaccactgtcgtgggtgctggagagtctaatatgtttggatattcagattat |
20116192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 66 - 207
Target Start/End: Original strand, 20067301 - 20067443
Alignment:
| Q |
66 |
ttatccacttgatttaatttccaacacaa-agtctcatttgtcttcccataaatagatgtctcgctcattccatttgtgcaaattaaaattcaatccaaa |
164 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||| | ||| |||| |||||||| |||||| || ||||||||| || |||||||||||| ||||||| |
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| T |
20067301 |
ttattcacttgatttaatttccaacacaatagtctcgtgtgttttcctataaatagctgtctcacttattccatttatgtaaattaaaattcgatccaaa |
20067400 |
T |
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| Q |
165 |
catggcctctacatactcaatactattacttctacttggaatg |
207 |
Q |
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||||||||||| ||| ||| || |||||||| ||||||||||| |
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| T |
20067401 |
catggcctctaaatattcactagtattacttatacttggaatg |
20067443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 20054258 - 20054354
Alignment:
| Q |
113 |
ataaatagatgtctcgctcattccatttgtgcaaattaaaattcaatccaaacatggcctctacatactcaatactattacttctacttggaatgatg |
210 |
Q |
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|
||||||||||||||| ||| ||||||||||| ||| ||| ||| || ||||||||||||| ||||||| || ||||||||||||||||||||||| |
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| T |
20054258 |
ataaatagatgtctcactctttccatttgtgtgaatcaaa-ttccataataacatggcctctaaatactcactagtattacttctacttggaatgatg |
20054354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 20048687 - 20048783
Alignment:
| Q |
113 |
ataaatagatgtctcgctcattccatttgtgcaaattaaaattcaatccaaacatggcctctacatactcaatactattacttctacttggaatgatg |
210 |
Q |
| |
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|||||||| |||||| | | ||||||||||| ||||||||| | || |||||||||||||| ||||||| | ||||||||||||||||||||||| |
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| T |
20048687 |
ataaatagttgtctcaccctttccatttgtgtgaattaaaat-ctataaaaacatggcctctaaatactcacaagtattacttctacttggaatgatg |
20048783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 20038519 - 20038618
Alignment:
| Q |
113 |
ataaatagatgtctcgctcattccatttgtgcaaattaaaattcaatccaaacatggcctctacatactcaa---tactattacttctacttggaatgat |
209 |
Q |
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|||||||| |||||| | | ||||||||||| ||||||||| | || |||||||||||||| ||||||| || |||||||||||||||||||||| |
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| T |
20038519 |
ataaatagttgtctcaccctttccatttgtgtgaattaaaat-ctataaaaacatggcctctaaatactcacaagtattattacttctacttggaatgat |
20038617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 2913979 - 2913923
Alignment:
| Q |
164 |
acatggcctctacatactcaatactattacttctacttggaatgatgatggttacca |
220 |
Q |
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||||||||||||||| |||| || ||||| |||||||||| ||||| ||| |||||| |
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|
| T |
2913979 |
acatggcctctacatgctcactaatattatttctacttggtatgataatgcttacca |
2913923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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