View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_6 (Length: 643)
Name: NF1272_low_6
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 117 - 634
Target Start/End: Original strand, 47372952 - 47373460
Alignment:
| Q |
117 |
gaaaattcatcttcattttgtagttgttcgttttcatctatgacatcgtcagcatcaacttcaccatcttcttcttgttcttcttccgggtcaaaacttg |
216 |
Q |
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| T |
47372952 |
gaaaattcatcttcattttgtagttgttcgttttcatc---------gtcagcatcaacttcaccatcttcttcttgttcttcttccgggtcaaaacttg |
47373042 |
T |
|
| Q |
217 |
tagtctcatttgtcaaaaaatagagacgaagacggccatggcttctatcagcttgaaagcaagaagtacttggtgggaccttagtgacttcaatcaccaa |
316 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47373043 |
tagtctcatttgtcaaaaaatagagacgaagacagccatggcttctatcagcttgaaagcaagaagtacttggtgggaccttagtgacttcaatcaccaa |
47373142 |
T |
|
| Q |
317 |
ccttccatctccacggtgggttctaacatgaagagattctgatcctcttatggttgtcaaaggtggtggaaaattctgagttttcactttcttagtagct |
416 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47373143 |
ccttccatctccacggtgggttctaacatgaaaagattctgatcctcttatggttgtcaaaggtggtggaaaattctgagttttcactttcttagtagct |
47373242 |
T |
|
| Q |
417 |
gctaaaacttgagaacaaggttgtctttgctccattgttcccattgaagacaacaatatgtcgttttctacagtgtcagtaccactctcgttgccaagat |
516 |
Q |
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| T |
47373243 |
gctaaaacttgagaacaaggttgtctttgctccattgttcccattgaagacaacaataagtcgttttctacaatgtcagtaccactctcgttgccaagat |
47373342 |
T |
|
| Q |
517 |
tttctgtgcacaattcaagactctttggattcagaaccaatgaggaacacttctgttgagggggaagataggtggctgttgtggtttcnnnnnnngatgt |
616 |
Q |
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| T |
47373343 |
tttctgtgcacaattcaagactctttggactcagaaccaaagaggaacacttctgctgagggggaagataggtggctgttgtggtttctttttttgatgt |
47373442 |
T |
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| Q |
617 |
gttttgagctatattatt |
634 |
Q |
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|||||||||||||||||| |
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| T |
47373443 |
gttttgagctatattatt |
47373460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 126 - 604
Target Start/End: Complemental strand, 47385974 - 47385499
Alignment:
| Q |
126 |
tcttcattttgtagttgttcgttttcatctatgacatcgtcagcatcaacttcaccatcttcttcttgttcttcttccgggtcaaaacttgtagtctcat |
225 |
Q |
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|||| ||| ||| ||| ||| ||||||||||||||||| ||| ||||||| ||| |||| ||||||||||| ||||||||||||||||||||||| |
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| T |
47385974 |
tctttattatgtggtttttcattttcatctatgacatcatcatcatcaacatcaacatcctcttcttgttc------cgggtcaaaacttgtagtctcat |
47385881 |
T |
|
| Q |
226 |
ttgtcaaaaaatagagacgaagacggccatggcttctatcagcttgaaagcaagaagtacttggtgggaccttagtgacttcaatcaccaaccttccatc |
325 |
Q |
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| T |
47385880 |
ttgtcaaaaaacagagacgaagacggccatggcttctatcagcttgaaaacatgatgtacttggtgggacctttgtgacttcaattactaacctaccatc |
47385781 |
T |
|
| Q |
326 |
tccacggtgggttctaacatgaagagattctgatcctcttatggttgtcaaaggtggtggaaaattctgagttttcactttcttagtagctgctaaaact |
425 |
Q |
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| T |
47385780 |
ttcacggtggggtctaacacgaagagattctgatcctctcatcgttgtcaaaggtggtggaaaattatggatttttggtttcttagtagctattaatact |
47385681 |
T |
|
| Q |
426 |
tgagaacaaggttgtctttg---ctccattgttcccattgaagacaacaatatgtcgttttctacagtgtcagtaccactctcgttgccaagattttctg |
522 |
Q |
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|| |||||||| |||||| |||||||| |||||||||||||||||| ||||| ||||||||| ||||||| ||||| || || |||||||| || | |
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| T |
47385680 |
ggactacaaggttctctttgctcctccattgctcccattgaagacaacaacatgtcattttctacaatgtcagtgccactttcattaccaagattctccg |
47385581 |
T |
|
| Q |
523 |
tgcacaattcaagactctttggattcagaaccaatgaggaacacttctgttgagggggaagataggtggctgttgtggtttc |
604 |
Q |
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| T |
47385580 |
tacataattcaaggctctttggactcatagccaaagaggaacgtttctgttgaggatgcacataggtggttgttgtggtttc |
47385499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 260 - 331
Target Start/End: Complemental strand, 20976673 - 20976602
Alignment:
| Q |
260 |
tctatcagcttgaaagcaagaagtacttggtgggaccttagtgacttcaatcaccaaccttccatctccacg |
331 |
Q |
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||||||||||||||| || || ||||||||||||||||| | |||||||| |||||||||||||| |||| |
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| T |
20976673 |
tctatcagcttgaaaacatgaggtacttggtgggaccttttttacttcaattgccaaccttccatcttcacg |
20976602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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