View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_60 (Length: 306)
Name: NF1272_low_60
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_60 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 15151191 - 15150913
Alignment:
| Q |
1 |
tatgggcgttactcaatgactcaaatttcatgagagctttgtaatccattaatcatatgaaaagtgctaatatggtgagaatcaaaattcgaacacataa |
100 |
Q |
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| T |
15151191 |
tatgggcgttactcaatgactcaaatttcatgagagctttgtaatccattaatcatatgaaaagtgctaatatggtgagaatcaaaattcgaacacataa |
15151092 |
T |
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| Q |
101 |
atattgtcgaatgtgtaattaaaatattatcactaacaaaatcatatcctcatcaatatcaatattatagtaatnnnnnnntcttcatcaatatattaaa |
200 |
Q |
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| T |
15151091 |
atattgtcgaatgtgtaattaaaatattatcactaacagaatcatatcctcatcaatatcaata-tatagtaataaaaaaatcttcatcaatatattaaa |
15150993 |
T |
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| Q |
201 |
tacttatcatccatataaatagatcaattatacaaaacttgaatagtttgtaacacccagttttttaacacgcatacaat |
280 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15150992 |
tacttatcatccatataaataggtcaattatacaaaacttgaatcgtttgtaacacccagttttttaacacgcatacaat |
15150913 |
T |
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