View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_61 (Length: 303)
Name: NF1272_low_61
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_61 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 40 - 274
Target Start/End: Complemental strand, 44156044 - 44155810
Alignment:
| Q |
40 |
ctttaaaccgaggtagatcattaactttcatatggacttgccacttcataaaatcatcatcaattagtatacatattgcaattttgctacacttaattga |
139 |
Q |
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| T |
44156044 |
ctttaaaccaaggtagatcattaactttcatatggacttgccacttcataaaatcatcatcaattagtatacaaattgcaattttgctacacttaattga |
44155945 |
T |
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| Q |
140 |
tacaaactagtaaacaacctcaaatcatgataactgacatttttccccattttctttttccttctcaagaacaatacagggtgaccattttgcccaccac |
239 |
Q |
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| T |
44155944 |
tagaaactagtaaacaacctcaaatcatgataactcacatctttccccattttctttttccttctcaagaacaatacagggtgaccattttgcccaccac |
44155845 |
T |
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| Q |
240 |
atagatatattatattagatagattatacatttgc |
274 |
Q |
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| T |
44155844 |
atagatatattatattagatagattatacatttgc |
44155810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 55 - 250
Target Start/End: Complemental strand, 16702538 - 16702343
Alignment:
| Q |
55 |
gatcattaactttcatatggacttgccacttcataaaatcatcatcaattagtatacatattgcaattttgctacacttaattgatacaaactagtaaac |
154 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||| | |
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| T |
16702538 |
gatcattaactttcatatagacttgccacttcataaaatcatcatcaattagtatacagcttgcaattttgctacacttaattgatagaaattagtaagc |
16702439 |
T |
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| Q |
155 |
aacctcaaatcatgataactgacatttttccccattttctttttccttctcaagaacaatacagggtgaccattttgcccaccacatagatatatt |
250 |
Q |
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| T |
16702438 |
aacctcaaatcatgatagctgacattcttccccattttctttttccttttcaagaacaatacagggcgaccattttgcccaccacatagatatatt |
16702343 |
T |
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