View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1272_low_68 (Length: 285)
Name: NF1272_low_68
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_68 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 55270780 - 55271019
Alignment:
| Q |
3 |
catctccaacaatatacgaagtcaccccataatctaacaat----aagatcacgtaattaaatagtttataagaattcaaagaaattaaatccatgtgat |
98 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
55270780 |
catctccaacatcatacgaagtcaccccataatctaacaattaataagatcacgtaattaaacagtttataagaattcaaagaaaataaatccatgtgat |
55270879 |
T |
|
| Q |
99 |
aagnnnnnnntagtaataacatcaatagaagtacctaattccgcataactaagttaacaaaataaaataagacaaattttcaagtttagtcttacataaa |
198 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55270880 |
aagaaaaaaatagtaataacatcaatag---tacctaattccgcataactaagttaacaaaataaaataagacaaattttcaagtttagtcttacataaa |
55270976 |
T |
|
| Q |
199 |
ttttgttcaattttagtcctannnnnnngactaaaaacactca |
241 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
55270977 |
ttttgttcaattttagtcctattttcttgactaaaaacactca |
55271019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 55263916 - 55264012
Alignment:
| Q |
3 |
catctccaacaatatacgaagtcaccccataatctaac----aataagatcacgtaattaaatagtttataagaattcaaagaaattaaatccatgt |
95 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||| ||| |||||||| |||||| ||||||||||||||| ||||||||||| |
|
|
| T |
55263916 |
catctccaacatcatacgaagtcaccccataatctaacaattaataaaatcgtataattaaacagtttacaagaattcaaagaaaataaatccatgt |
55264012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University