View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1272_low_69 (Length: 284)

Name: NF1272_low_69
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1272_low_69
NF1272_low_69
[»] chr8 (1 HSPs)
chr8 (1-284)||(29024861-29025144)


Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 29024861 - 29025144
Alignment:
Q  1 ttgatcgtagtagaagaaatggtagtacaaaagttgttaccttatatatattccaatacacatcaagtggaaagataactttcaatcgaatcttaacttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  29024861 ttgatcgtagtagaagaaatggtagtacaaaagttgttaccttatatatattccaatatacatcaagcggaaagataactttcaatcgaatcttaacttc 29024960  T
Q  101 taatcggtataaacaagggcattttgagaatatcaaaggacatgtgagcaattgagaagattaatgaaacgactttctttcttttttactttatatatgt 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29024961 taatcggtataaacaagggcattttgagaatattaaaggacatgtgagcaattgagaagattaatgaaacgactttctttcttttttactttataaatgt 29025060  T
Q  201 tagaagtctagagatccgatatcatctcatatgtatctcatcgggtttatgccattgtcgtacaatattgtattttcttaaagt 284  Q
    |||||||||||||| ||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||    
T  29025061 tagaagtctagagacccgatatcatctcatatgtatctcatccgatttatgctattgtcgtacaatattgtattttcttaaagt 29025144  T

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