View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_70 (Length: 283)
Name: NF1272_low_70
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_70 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 30 - 168
Target Start/End: Complemental strand, 25671060 - 25670922
Alignment:
| Q |
30 |
attttttcttatactgttggtgcttttagtctttggggtggtggatttctttatcattggggtgttattgattattctggtggctatgttattcatcttt |
129 |
Q |
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| T |
25671060 |
attttttcttatactgttggtgcttttagtctttggggtggtggatttctttatcattggggtgtgattgattattctggtggttatgttattcatcttt |
25670961 |
T |
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| Q |
130 |
cttctggaattgctggtttcactgctgcttattgggtaa |
168 |
Q |
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| T |
25670960 |
cttctggaattgctggtttcactgctgcttattgggtaa |
25670922 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 187 - 268
Target Start/End: Complemental strand, 25670871 - 25670789
Alignment:
| Q |
187 |
acccttcatctaattttgcctagaaacttaaagggtaccctccctttcatcatacattcatatgggg-gcataaagtttgtat |
268 |
Q |
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| T |
25670871 |
acccttcatttaattttgcttaaaaacttaaagggtaccctccctttcatcatacattcatatggggtgcataaagtttgtat |
25670789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 166
Target Start/End: Original strand, 47501661 - 47501734
Alignment:
| Q |
93 |
gttattgattattctggtggctatgttattcatctttcttctggaattgctggtttcactgctgcttattgggt |
166 |
Q |
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| T |
47501661 |
gttattgattttgctgggggatatgttattcacctctctgctggtgttgctggttttactgctgcttattgggt |
47501734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 30 - 169
Target Start/End: Complemental strand, 5625271 - 5625132
Alignment:
| Q |
30 |
attttttcttatactgttggtgcttttagtctttggggtggtggatttctttatcattggggtgttattgattattctggtggctatgttattcatcttt |
129 |
Q |
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| T |
5625271 |
attttctcttacactgttggtgcttttagtatatggggtggtggatttttgtatcattggggtgtcattgatttctctggtggctatgttattcatcttt |
5625172 |
T |
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| Q |
130 |
cttctggaattgctggtttcactgctgcttattgggtaaa |
169 |
Q |
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| T |
5625171 |
cttctggaattggtggattcactgcagcttattgggtaaa |
5625132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 6e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 32 - 166
Target Start/End: Complemental strand, 39726522 - 39726388
Alignment:
| Q |
32 |
tttttcttatactgttggtgcttttagtctttggggtggtggatttctt-tatcattggggtgttattgattattctggtggctatgttattcatctttc |
130 |
Q |
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| T |
39726522 |
tttttcttatactattggtgcttttagtttgtggggtggtgg-tttcttgtttcaatggggtgttatggattattctggtggttatgttattcatctttc |
39726424 |
T |
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| Q |
131 |
ttctggaattgctggtttcactgctgcttattgggt |
166 |
Q |
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| T |
39726423 |
ttctgggattgctggtttcaccgctgcttattgggt |
39726388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 168
Target Start/End: Original strand, 31606189 - 31606237
Alignment:
| Q |
120 |
attcatctttcttctggaattgctggtttcactgctgcttattgggtaa |
168 |
Q |
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| T |
31606189 |
attcatctatcttctggtgttgcaggtttcactgctgcttattgggtaa |
31606237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 13349918 - 13349844
Alignment:
| Q |
94 |
ttattgattattctggtggctatgttattcatctttcttctggaattgctggtttcactgctgcttattgggtaa |
168 |
Q |
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|||| ||||| |||||||| ||||| |||||| | |||||||| ||||||| || ||||||||||||||||||| |
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| T |
13349918 |
ttatcgattactctggtggttatgtcattcatttgtcttctggggttgctgggtttactgctgcttattgggtaa |
13349844 |
T |
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