View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1272_low_72 (Length: 278)
Name: NF1272_low_72
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_72 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 23 - 270
Target Start/End: Original strand, 35678015 - 35678262
Alignment:
| Q |
23 |
atcatcattttcttcaccaagtaacatagcttccaattcctcagaatcccaatcagactcatcatcaattgacccattatcctcttcttcacattcatcc |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35678015 |
atcatcattttcttcaccaagtaacatagcttccaattcctcagaatcccaatcagactcatcatcaattgacccattatcctcttcttcaccatcatcc |
35678114 |
T |
|
| Q |
123 |
tcttcatcatctaattcataatcctccttagaaaatgtttcaatttttacctctttttgttggtaaaaaccagggagatttggatcagtatcttgcatga |
222 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35678115 |
tcttcatcatctaattcataatcctcctcagaaaatgtttcaatttttacctctttttgttggtaaaaaccagggagatttggatcattatcttgcatga |
35678214 |
T |
|
| Q |
223 |
aaattccacaaccagggcaaatgggtccaagagcttcatcttcatctc |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35678215 |
aaattccacaaccagggcaaatgggtccaagagcttcatcttcatctc |
35678262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University