View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_73 (Length: 273)
Name: NF1272_low_73
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_73 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 44224641 - 44224865
Alignment:
| Q |
9 |
ggatcaaatccaataacatagtaggtaagaaacacccaaagagaaacttccattaatgaaacgggaatcttgagaatccacgaaggaatagcatatgccc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44224641 |
ggatcaaatccaataacatagtaggtaagaaacacccaaagagaaacttccattaatgaaacgggaatcttgagaatccacgaaggaatagcatatgccc |
44224740 |
T |
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| Q |
109 |
atgagggataaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacatcatcgttactag |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44224741 |
atgagggataaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacatcatcgttactag |
44224840 |
T |
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| Q |
209 |
tgtgaaaaacaaagcaccggcataa |
233 |
Q |
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||||||||||||||||||||||||| |
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| T |
44224841 |
tgtgaaaaacaaagcaccggcataa |
44224865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 44212475 - 44212699
Alignment:
| Q |
9 |
ggatcaaatccaataacatagtaggtaagaaacacccaaagagaaacttccattaatgaaacgggaatcttgagaatccacgaaggaatagcatatgccc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||| |
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| T |
44212475 |
ggatcaaatccaataacatagtaggtaagaaacacccagagagaaacttccactaatgagacgggaatcttgagaatccatgaaggaatagcatatgccc |
44212574 |
T |
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| Q |
109 |
atgagggataaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacatcatcgttactag |
208 |
Q |
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| T |
44212575 |
atgagggataaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacatcatcgttactag |
44212674 |
T |
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| Q |
209 |
tgtgaaaaacaaagcaccggcataa |
233 |
Q |
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|||||||||||||||||| |||||| |
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| T |
44212675 |
tgtgaaaaacaaagcaccagcataa |
44212699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 9 - 233
Target Start/End: Original strand, 44235451 - 44235675
Alignment:
| Q |
9 |
ggatcaaatccaataacatagtaggtaagaaacacccaaagagaaacttccattaatgaaacgggaatcttgagaatccacgaaggaatagcatatgccc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
44235451 |
ggatcaaatccaataacatagtaggtaagaaacacccatagagaaacttccactaatgagatgggaatcttgagaatccacgaaggaatagcatatgccc |
44235550 |
T |
|
| Q |
109 |
atgagggataaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacatcatcgttactag |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44235551 |
atgagggataaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacatcatcgttaccag |
44235650 |
T |
|
| Q |
209 |
tgtgaaaaacaaagcaccggcataa |
233 |
Q |
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|||||||||||||||||| |||||| |
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| T |
44235651 |
tgtgaaaaacaaagcaccagcataa |
44235675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 72 - 226
Target Start/End: Complemental strand, 2885207 - 2885053
Alignment:
| Q |
72 |
ggaatcttgagaatccacgaaggaatagcatatgcccatgagggataaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatag |
171 |
Q |
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||||||||||| ||||| | ||| ||||||||||||||||| ||| |||| |||||||||| |||||||||| || ||||||||||||||||||||| | |
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| T |
2885207 |
ggaatcttgaggatccatgtaggtatagcatatgcccatgaaggaaaaaacagaaggtctctttgcttgtagaaactaggaagcttagcaatggtcattg |
2885108 |
T |
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| Q |
172 |
aaatctcagacattccattaaacatcatcgttactagtgtgaaaaacaaagcacc |
226 |
Q |
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||| || | ||||||||||||||| ||| | |||| || |||||| |||||||| |
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| T |
2885107 |
aaagttcggccattccattaaacataatcataactactgcgaaaaataaagcacc |
2885053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 2899261 - 2899448
Alignment:
| Q |
9 |
ggatcaaatccaataacatagtaggtaagaaacacccaaagagaaacttccattaatgaaacgggaatcttgagaatccacgaaggaatagcatatgccc |
108 |
Q |
| |
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||||| ||||| || ||||| ||||| || || ||||||| || |||||||| |||| || ||||||||||| ||||| | ||| ||||||||||||| |
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| T |
2899261 |
ggatcgaatcctattacataataggtgaggaaaacccaaacagcaacttccagaaatgtaataggaatcttgaggatccatgtaggtatagcatatgccc |
2899360 |
T |
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| Q |
109 |
atgagggataaaatagaaggtctcgttgcttgtagtaaacaggaagcttagcaatggtcatagaaatctcagacattccattaaacat |
196 |
Q |
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|||| ||| |||| |||||||||| |||||||||| || ||||||||| ||||||||||| |||| |||| || |||||||||||| |
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| T |
2899361 |
atgaaggaaaaaacagaaggtctctttgcttgtagaaactaggaagcttcgcaatggtcattgaaagttcagccaatccattaaacat |
2899448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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