View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_79 (Length: 265)
Name: NF1272_low_79
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_79 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 50047438 - 50047202
Alignment:
| Q |
1 |
caacatagttttatgtcttcctagtggaagttaaaggaagaaaacacaataaggttaagctacgattgctcagaacctttatatattttagtatgttgta |
100 |
Q |
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| T |
50047438 |
caacatagttttatgtcttcctagtggaagttaaaggaagaaaacacaataaggttaagctacgattgctcagaacatttatatattttagtatgttgta |
50047339 |
T |
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| Q |
101 |
ccgacattctcccactgtaagtatctcgaaaatactaacatcacatgaaaatcaaactaaactttcaaatccaatctactttaatctggttggtaaggga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50047338 |
ccgacattctcccactgtaagtatctcgaaaatactaacatcacatgaaaatcaaactaaactttcaaatccaatctactttaatctggttggtaaggga |
50047239 |
T |
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| Q |
201 |
aagaattaacattcggaaaataaacaaacaaaaaact |
237 |
Q |
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|||||||||||||||||||| |||||||||||||||| |
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| T |
50047238 |
aagaattaacattcggaaaacaaacaaacaaaaaact |
50047202 |
T |
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