View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_80 (Length: 257)
Name: NF1272_low_80
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_80 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 30 - 257
Target Start/End: Original strand, 37934799 - 37935026
Alignment:
| Q |
30 |
taagctactgttagataaagccttaaaggtcatacaatctaagtaatgttattgaatcaatatggatatagtaatgactgcgatactcgatgaaagtgaa |
129 |
Q |
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| T |
37934799 |
taagctactgttagataaagccttaaaggtcatacaatctaagtaatgttattgaatcaatatggatatagtaatgactgcgatactcgatgaaagtgaa |
37934898 |
T |
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| Q |
130 |
gacatttcctcgaatctacttaggcctttattagatagtgtaagaaagaagaaccaggtaacatgaagaactgtgattgtgttgcgatgtttcaggttca |
229 |
Q |
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| T |
37934899 |
gacatttcctcgaatctacttaggcctttattagatagtgtaagaaagaagaaccaggtaacatgaagtactgtgattatgttgcgatgtttcaggttca |
37934998 |
T |
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| Q |
230 |
ggtagttgagaacaatcttgatgtacct |
257 |
Q |
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| T |
37934999 |
ggtagttgagaacaatcttgatgtacct |
37935026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 56 - 194
Target Start/End: Original strand, 844841 - 844977
Alignment:
| Q |
56 |
aggtcatacaatctaagtaatgttattgaatcaatatggatatagtaatgactgcgatactcgatgaaagtgaagacatttcctcgaatctacttaggcc |
155 |
Q |
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| T |
844841 |
aggtcaaaccatccaagtagtgtaattgaatcaat--ggagatagtaatgaccgggatactcgacgaaagtgaagacatttcctcggatctacttaggcc |
844938 |
T |
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| Q |
156 |
tttattagatagtgtaagaaagaagaaccaggtaacatg |
194 |
Q |
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| T |
844939 |
tttattagatagtgtaagaaaggagaaccaggtaacatg |
844977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 52 - 194
Target Start/End: Original strand, 10455286 - 10455426
Alignment:
| Q |
52 |
ttaaaggtcatacaatctaagtaatgttattgaatcaatatggatatagtaatgactgcgatactcgatgaaagtgaagacatttcctcgaatctactta |
151 |
Q |
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| T |
10455286 |
ttaaaggccaaaccatccaagtaatgtaattgaatcaat--ggaaatagtaatgaccgggatactcgatgaaagtgaagatgtttcctcgaatctagtca |
10455383 |
T |
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| Q |
152 |
ggcctttattagatagtgtaagaaagaagaaccaggtaacatg |
194 |
Q |
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| T |
10455384 |
ggcctttactagatagtgtaagaaaggagaaccaggtaacatg |
10455426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 845313 - 845367
Alignment:
| Q |
203 |
tgattgtgttgcgatgtttcaggttcaggtagttgagaacaatcttgatgtacct |
257 |
Q |
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| T |
845313 |
tgattgtgttgcaatgcttcaggttcaggatgttgagaacaatcttgatatacct |
845367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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