View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_82 (Length: 254)
Name: NF1272_low_82
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_82 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 45362746 - 45362985
Alignment:
| Q |
1 |
tcccgtacgtgcaatccatatcataattccactacactttttaaagaaaaagtatatgattattggcgttatccaaagtctnnnnnnnnnntctcactct |
100 |
Q |
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| T |
45362746 |
tcccgtacgtgcaatccatatcataattccactacactttttaaagaaaaagtatatgattattggcgttatccaaagtctaaaaaaaaaatctcactct |
45362845 |
T |
|
| Q |
101 |
tataatataatgtcattagtttttaactagagtaacaatcagcagaggtgaggaaaggatgacaacgacaagggaatattgagggccgttacccccaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45362846 |
tataatataatgtcattagtttttaactagagtaacaatcagcagaggtgaggaaaggatgacaacgacaagggaatattgagggccgttacccccaaat |
45362945 |
T |
|
| Q |
201 |
gccacccctctgcagccaaatgcactttctatgctagtat |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
45362946 |
gccacccctctgcagccaaatgcactttctatgctagtat |
45362985 |
T |
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