View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_85 (Length: 251)
Name: NF1272_low_85
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_85 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 44224641 - 44224400
Alignment:
| Q |
1 |
caaatgttggaaggtaaaagaagtttcttttattctgtttggagaatgaagtatcgaatgtcacttctactatctagtttgcatttgtgtgttacttatg |
100 |
Q |
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| T |
44224641 |
caaatgttggaaggtaaaagaagtttcttttattctgtttggagaatgtagtattgaacgtcacttctactatctagtttgcatttgtgtgttacttatg |
44224542 |
T |
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| Q |
101 |
atgtgaggtcttgaatttttggcaggatgttcaagcagttcgttgtgttgtttttcatgagtcagatggcttcaggattgttccgagccatcgcatccct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44224541 |
atgtgaggtcttgaatttttggcaggatgttcaagcagttcgttgtgttgtttttcatgagtcagatggcttcaggattgttccgagccatcgcatccct |
44224442 |
T |
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| Q |
201 |
gggtagaaacatgattgttgccaatacatttgggtcctttgc |
242 |
Q |
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| T |
44224441 |
gggtagaaacatgattgttgccaatacatttgggtcctttgc |
44224400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 44212475 - 44212234
Alignment:
| Q |
1 |
caaatgttggaaggtaaaagaagtttcttttattctgtttggagaatgaagtatcgaatgtcacttctactatctagtttgcatttgtgtgttacttatg |
100 |
Q |
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|||||||||| |||||||| ||||| |||||||||||||||||| ||| ||||| |||||||| ||||||| ||||||||| |||||| ||||||| ||| |
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| T |
44212475 |
caaatgttgggaggtaaaataagttgcttttattctgtttggagcatgtagtattgaatgtcagttctactgtctagtttgtatttgtatgttactaatg |
44212376 |
T |
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| Q |
101 |
atgtgaggtcttgaatttttggcaggatgttcaagcagttcgttgtgttgtttttcatgagtcagatggcttcaggattgttccgagccatcgcatccct |
200 |
Q |
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| T |
44212375 |
atgtgaggtcttgaattctaggcaggatgttcaagcagttcgttgtgttgtttttcatgagtcagatggcttcaggattgttccgagccatcgcatccct |
44212276 |
T |
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| Q |
201 |
gggtagaaacatgattgttgccaatacatttgggtcctttgc |
242 |
Q |
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| T |
44212275 |
gggtagaaacatgattgttgccaatacatttgggtcctttgc |
44212234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 44235451 - 44235215
Alignment:
| Q |
1 |
caaatgttggaaggtaaaagaagtttcttttattctgtttggagaatgaagtatcgaatgtcacttctactatctagtttgcatttgtgtgttacttatg |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||| |||| ||||| |||||||| ||| ||||||||||| ||||||||||| |
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| T |
44235451 |
caaatgttggaaggtaaaagaaatttcttttattctgtttggagcatgtggtattgaatgccacttcta---tcttgtttgcatttga-tgttacttatg |
44235356 |
T |
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| Q |
101 |
atgtgaggtcttgaatttttggcaggatgttcaagcagttcgttgtgttgtttttcatgagtcagatggcttcaggattgttccgagccatcgcatccct |
200 |
Q |
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| T |
44235355 |
atgtgaggtcttgaatttt-ggcaggatgttcaagcagttccttgtgttgtttttcatgagtcagatggcttcaggattgttccgagccatcgcatccct |
44235257 |
T |
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| Q |
201 |
gggtagaaacatgattgttgccaatacatttgggtcctttgc |
242 |
Q |
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| T |
44235256 |
gggtagaaacatgattgttgccaatacatttgggtcctttgc |
44235215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 2885507 - 2885547
Alignment:
| Q |
202 |
ggtagaaacatgattgttgccaatacatttgggtcctttgc |
242 |
Q |
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||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2885507 |
ggtagaaacatgattgtggccaatacatttgggtcctttgc |
2885547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 2898906 - 2898866
Alignment:
| Q |
202 |
ggtagaaacatgattgttgccaatacatttgggtcctttgc |
242 |
Q |
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||||||||||||||||| ||||| |||||||| |||||||| |
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| T |
2898906 |
ggtagaaacatgattgtggccaacacatttggatcctttgc |
2898866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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