View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_86 (Length: 251)
Name: NF1272_low_86
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_86 |
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| [»] chr4 (5 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 26646975 - 26646736
Alignment:
| Q |
12 |
aatactacggataagtttgtcatatttcaggaacattggtttgagttggtgcttgatgatgatgtgccatccctacttaaaagggttgttgataaagagt |
111 |
Q |
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|||||||||||||||||||||||| || || || |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26646975 |
aatactacggataagtttgtcataattgagaaagattgttttgagttggtggttgatgatgatgtgccatccctacttaaaagggttgttgataaagagt |
26646876 |
T |
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| Q |
112 |
ataaacctatatatgaaagcattgtcacacagtttggttgcatgattctggaaatatttgttcttgactatctattcagataccatatatgatttattta |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
26646875 |
ataaacctatatatgaaagcattgtcacacagtttggttgcatgattctggaaatatttgttcttgactatctattcaggtaccatatatgacttattta |
26646776 |
T |
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| Q |
212 |
ttgacctgagtcttgtttctttatattaagtattggtgtg |
251 |
Q |
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| T |
26646775 |
ttgacctgagtcttgtttctttatattaagtattcgtgtg |
26646736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 123 - 236
Target Start/End: Original strand, 13682888 - 13683001
Alignment:
| Q |
123 |
tatgaaagcattgtcacacagtttggttgcatgattctggaaatatttgttcttgactatctattcagataccatatatgatttatttattgacctgagt |
222 |
Q |
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|||||||| | ||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| || |
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| T |
13682888 |
tatgaaagaaatgtcacaaagttgggttgcatgattgtggaaatatttgttcttgactatctattcaggtatcatatatgatttatttattgacctgggt |
13682987 |
T |
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| Q |
223 |
cttgtttctttata |
236 |
Q |
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| T |
13682988 |
cttgtttctttata |
13683001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 147 - 245
Target Start/End: Complemental strand, 22188155 - 22188052
Alignment:
| Q |
147 |
ggttgcatgattctggaaatatttgttcttgactatctattcagatacc----atatatgatttatttattgacctgag-tcttgtttctttatattaag |
241 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||| || | |||||| | ||||||||||| |
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| T |
22188155 |
ggttgcatgattgtggaaatatttgttcttgactatctattcaggtaccatatatatatgatttatttaatgacatgggatcttgtatttttatattaag |
22188056 |
T |
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| Q |
242 |
tatt |
245 |
Q |
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|||| |
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| T |
22188055 |
tatt |
22188052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 33077994 - 33078061
Alignment:
| Q |
184 |
tattcagataccatatatgatttatttattgacctgagtcttgtttctttatattaagtattggtgtg |
251 |
Q |
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| T |
33077994 |
tattcaggtaccatacatcatttatttattgacctggatcttgtttctttatattaagtattcgtgtg |
33078061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 13689467 - 13689523
Alignment:
| Q |
134 |
tgtcacacagtttggttgcatgattctggaaatatttgttcttgactatctattcag |
190 |
Q |
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| T |
13689467 |
tgtcacaaagttgggttgcatgattgtggaaatatttgttcttgactatgtattcag |
13689523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 123 - 251
Target Start/End: Complemental strand, 37001686 - 37001559
Alignment:
| Q |
123 |
tatgaaagcattgtcacacagtttggttgcatgattctggaaatatttgttcttgactatctattcagataccatatatgatttatttattgacctgagt |
222 |
Q |
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|||||||||||||||||| |||| ||||||| |||| ||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||| || |
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| T |
37001686 |
tatgaaagcattgtcacagagttgggttgcaggattgtggaaatatttgttcttgactatctattcaggtaccatttatgatatatttattgacctg-gt |
37001588 |
T |
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| Q |
223 |
cttgtttctttatattaagtattggtgtg |
251 |
Q |
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| T |
37001587 |
cttgtttctttatattaagtattcgtgtg |
37001559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 123 - 251
Target Start/End: Complemental strand, 36991969 - 36991839
Alignment:
| Q |
123 |
tatgaaagcattgtcacacagtttggttgcatgattctggaaatatttgttcttgactatctattcagataccatatatgatttatttattgacctgag- |
221 |
Q |
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|||||||||||||||||| |||| ||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| || | |
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| T |
36991969 |
tatgaaagcattgtcacagagttgggttgcaggattgtggaaatatttgttcttgactatctattcaggtaccatatatgatttatttaatgaaatggga |
36991870 |
T |
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| Q |
222 |
tcttgt-ttctttatattaagtattggtgtg |
251 |
Q |
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|||||| || ||||||||||||||| ||||| |
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| T |
36991869 |
tcttgtattttttatattaagtattcgtgtg |
36991839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 211
Target Start/End: Complemental strand, 8596820 - 8596728
Alignment:
| Q |
123 |
tatgaaagcattgtcacacagtttggttgcatgattctggaaatatttgttcttgactat----ctattcagataccatatatgatttattta |
211 |
Q |
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|||||||||| || |||| |||| |||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
8596820 |
tatgaaagcaatgccacaaagttgggttgcatgattgtggaaatatttgttcttgactatctatctattcaggtaccatatatgatttattta |
8596728 |
T |
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