View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_87 (Length: 251)
Name: NF1272_low_87
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_87 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 22955332 - 22955091
Alignment:
| Q |
1 |
attcctcaagctctaatatattatttgtgcatgcacccaataactgtattttttatctataatttcatggaccttgtatttattgttttgtactctaaga |
100 |
Q |
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| T |
22955332 |
attcctcaagctctaatatattatttgtgcatgcacccaataactgtattttttatctataatttcatggaccttgtatttattgttttgtactctaaga |
22955233 |
T |
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| Q |
101 |
tgacaaaaatgaaatgaaattaggtagaaaatagttgtatttatagtgtttaactatctcataaatctggtggtattatcatgtcctatattacaaaaat |
200 |
Q |
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| T |
22955232 |
tcacaaaaatgaaatgaaattaggtagaaaatagttgtatttatagtgtttaactatctcataaatctggtggtattatcatgtcctatattacaaaaat |
22955133 |
T |
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| Q |
201 |
atcacaccnnnnnnnctaaacccaacttcatataagaataat |
242 |
Q |
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| T |
22955132 |
atcacacctttttttctaaacccaacttcatataagaataat |
22955091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 200271 - 200484
Alignment:
| Q |
1 |
attcctcaagctctaatatattatttgtgcatgcacccaataactgtattttttatctataatttcatggaccttgtatttattgttttgtact------ |
94 |
Q |
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||||| |||||||||||||| | ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
200271 |
attccacaagctctaatatactgtttgtgcatgcacccaataactggattttttatctgtaatttcatggaccttgtatttattgtattgtactctaaga |
200370 |
T |
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| Q |
95 |
--ctaagatgacaaaaatgaaatgaaattaggtagaaaatagttgtatttatagtgtttaactatctcataaatctggtggtattatcatgtcctatatt |
192 |
Q |
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| T |
200371 |
tgctaagatgacaaaaatgaaatgaaattaagtagaaatttgttttgtttatagtgtttacttatctcataaatatggtggtatcactatggcctacatt |
200470 |
T |
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| Q |
193 |
acaaaaatatcaca |
206 |
Q |
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|||||||||||||| |
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| T |
200471 |
acaaaaatatcaca |
200484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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