View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1272_low_89 (Length: 251)

Name: NF1272_low_89
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1272_low_89
NF1272_low_89
[»] chr6 (1 HSPs)
chr6 (13-251)||(5929490-5929728)
[»] chr3 (4 HSPs)
chr3 (203-234)||(10852745-10852776)
chr3 (204-234)||(7012679-7012709)
chr3 (204-234)||(23918881-23918911)
chr3 (204-234)||(42644301-42644331)
[»] chr8 (2 HSPs)
chr8 (204-234)||(19649233-19649263)
chr8 (204-234)||(38516345-38516375)
[»] chr5 (3 HSPs)
chr5 (204-234)||(22811079-22811109)
chr5 (205-234)||(5969976-5970005)
chr5 (205-234)||(7667752-7667781)
[»] chr4 (2 HSPs)
chr4 (204-234)||(17898088-17898118)
chr4 (204-234)||(36150628-36150658)
[»] chr2 (3 HSPs)
chr2 (204-234)||(10918651-10918681)
chr2 (204-234)||(15220821-15220851)
chr2 (204-234)||(23359960-23359990)
[»] chr1 (2 HSPs)
chr1 (204-234)||(4347037-4347067)
chr1 (205-234)||(7335912-7335941)
[»] chr7 (2 HSPs)
chr7 (204-233)||(29829330-29829359)
chr7 (205-233)||(44570701-44570729)


Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 5929490 - 5929728
Alignment:
Q  13 aatatcaaagccactgaatgtgatcacatgtgtcgatgttattttcagacatcaacacacaaacacactttcaaactgaactgtatgcttggttcaactt 112  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  5929490 aatatcaaagccactgaatgtgatcacatgtgtcgatgttatgttcagacatcaacacacagacacactttcaaactgaactgtatgcttggttcaactt 5929589  T
Q  113 ttgcaggtgctaaaattgatttgacgtggaaaattggttttgaacttttgagcttttgattctagaactgattttacataaatgtttggtgccaaacata 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5929590 ttgcaggtgctaaaattgatttgacgtggaaaattggttttgaacttttgagcttttgattctagaactgattttacataaatgtttggtgccaaacata 5929689  T
Q  213 aatcactttacattcaactcaccataatcaattttaagc 251  Q
    |||||||||||||||||||||||||||||||||||||||    
T  5929690 aatcactttacattcaactcaccataatcaattttaagc 5929728  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 203 - 234
Target Start/End: Complemental strand, 10852776 - 10852745
Alignment:
Q  203 gccaaacataaatcactttacattcaactcac 234  Q
    ||||||||||||||||||||||||||||||||    
T  10852776 gccaaacataaatcactttacattcaactcac 10852745  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Original strand, 7012679 - 7012709
Alignment:
Q  204 ccaaacataaatcactttacattcaactcac 234  Q
    |||||||||||||||||||||||||||||||    
T  7012679 ccaaacataaatcactttacattcaactcac 7012709  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Original strand, 23918881 - 23918911
Alignment:
Q  204 ccaaacataaatcactttacattcaactcac 234  Q
    |||||||||||||||||||||||||||||||    
T  23918881 ccaaacataaatcactttacattcaactcac 23918911  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Original strand, 42644301 - 42644331
Alignment:
Q  204 ccaaacataaatcactttacattcaactcac 234  Q
    |||||||||||||||||||||||||||||||    
T  42644301 ccaaacataaatcactttacattcaactcac 42644331  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Original strand, 19649233 - 19649263
Alignment:
Q  204 ccaaacataaatcactttacattcaactcac 234  Q
    |||||||||||||||||||||||||||||||    
T  19649233 ccaaacataaatcactttacattcaactcac 19649263  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Original strand, 38516345 - 38516375
Alignment:
Q  204 ccaaacataaatcactttacattcaactcac 234  Q
    |||||||||||||||||||||||||||||||    
T  38516345 ccaaacataaatcactttacattcaactcac 38516375  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Original strand, 22811079 - 22811109
Alignment:
Q  204 ccaaacataaatcactttacattcaactcac 234  Q
    |||||||||||||||||||||||||||||||    
T  22811079 ccaaacataaatcactttacattcaactcac 22811109  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 234
Target Start/End: Complemental strand, 5970005 - 5969976
Alignment:
Q  205 caaacataaatcactttacattcaactcac 234  Q
    ||||||||||||||||||||||||||||||    
T  5970005 caaacataaatcactttacattcaactcac 5969976  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 234
Target Start/End: Original strand, 7667752 - 7667781
Alignment:
Q  205 caaacataaatcactttacattcaactcac 234  Q
    ||||||||||||||||||||||||||||||    
T  7667752 caaacataaatcactttacattcaactcac 7667781  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Complemental strand, 17898118 - 17898088
Alignment:
Q  204 ccaaacataaatcactttacattcaactcac 234  Q
    |||||||||||||||||||||||||||||||    
T  17898118 ccaaacataaatcactttacattcaactcac 17898088  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Original strand, 36150628 - 36150658
Alignment:
Q  204 ccaaacataaatcactttacattcaactcac 234  Q
    |||||||||||||||||||||||||||||||    
T  36150628 ccaaacataaatcactttacattcaactcac 36150658  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Original strand, 10918651 - 10918681
Alignment:
Q  204 ccaaacataaatcactttacattcaactcac 234  Q
    |||||||||||||||||||||||||||||||    
T  10918651 ccaaacataaatcactttacattcaactcac 10918681  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Complemental strand, 15220851 - 15220821
Alignment:
Q  204 ccaaacataaatcactttacattcaactcac 234  Q
    |||||||||||||||||||||||||||||||    
T  15220851 ccaaacataaatcactttacattcaactcac 15220821  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Complemental strand, 23359990 - 23359960
Alignment:
Q  204 ccaaacataaatcactttacattcaactcac 234  Q
    |||||||||||||||||||||||||||||||    
T  23359990 ccaaacataaatcactttacattcaactcac 23359960  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Original strand, 4347037 - 4347067
Alignment:
Q  204 ccaaacataaatcactttacattcaactcac 234  Q
    |||||||||||||||||||||||||||||||    
T  4347037 ccaaacataaatcactttacattcaactcac 4347067  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 205 - 234
Target Start/End: Complemental strand, 7335941 - 7335912
Alignment:
Q  205 caaacataaatcactttacattcaactcac 234  Q
    ||||||||||||||||||||||||||||||    
T  7335941 caaacataaatcactttacattcaactcac 7335912  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 204 - 233
Target Start/End: Complemental strand, 29829359 - 29829330
Alignment:
Q  204 ccaaacataaatcactttacattcaactca 233  Q
    ||||||||||||||||||||||||||||||    
T  29829359 ccaaacataaatcactttacattcaactca 29829330  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 233
Target Start/End: Complemental strand, 44570729 - 44570701
Alignment:
Q  205 caaacataaatcactttacattcaactca 233  Q
    |||||||||||||||||||||||||||||    
T  44570729 caaacataaatcactttacattcaactca 44570701  T

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