View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1272_low_9 (Length: 602)

Name: NF1272_low_9
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1272_low_9
NF1272_low_9
[»] chr1 (1 HSPs)
chr1 (10-538)||(22955308-22955838)
[»] scaffold0015 (3 HSPs)
scaffold0015 (289-538)||(199762-200008)
scaffold0015 (73-263)||(200002-200194)
scaffold0015 (15-63)||(200242-200290)
[»] chr4 (4 HSPs)
chr4 (364-413)||(10980608-10980657)
chr4 (447-483)||(5727838-5727874)
chr4 (447-483)||(5765998-5766034)
chr4 (447-483)||(5768242-5768278)
[»] chr5 (2 HSPs)
chr5 (360-419)||(35933398-35933457)
chr5 (357-419)||(30580938-30581000)
[»] chr7 (2 HSPs)
chr7 (359-411)||(17971878-17971930)
chr7 (359-411)||(17977464-17977516)
[»] chr3 (2 HSPs)
chr3 (447-483)||(18651608-18651644)
chr3 (447-483)||(18691034-18691070)


Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 10 - 538
Target Start/End: Original strand, 22955308 - 22955838
Alignment:
Q  10 aataatatattagagcttgaggaatattctagaaaatatatattgtacaactatcttggtatatgtacacatcggcctttacgacacctaagtttatacc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22955308 aataatatattagagcttgaggaatattctagaaaatatatattgtacaactatcttggtatatgtacacatcggcctttacgacacctaagtttatacc 22955407  T
Q  110 catattccacttttggacaatctttatccgttgtacaaggacgagacactacaattgaaaaaatagaatgaaacactgttactaaaacataataaaattt 209  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  22955408 catattccacttttgaacaatctttatccgttgtacaaggacgagacactacaattgaaaaaatagaatgaaacattgttactaaaacataataaaattt 22955507  T
Q  210 catgtataaactgtgaagtaaagaaggaaatttgagaaggaggaatgggtggataataata--nnnnnnnnnnnaggggagggtggataataataattga 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||    
T  22955508 catgtataaactgtgaagtaaagaaggaaatttgagaaggaggaatgggtggataataataattcttttttttgaggggagggtggataataataattga 22955607  T
Q  308 taacttaccatcagttactctaattggagagctacaatcagttactttggtgacaagaaatatggaaagaaatagaaacataacacacacaaactttaaa 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22955608 taacttaccatcagttactctaattggagagctacaatcagttactatggtgacaagaaatatggaaagaaatagaaacataacacacacaaactttaaa 22955707  T
Q  408 gtttcagtcatannnnnnnnnctctttgcatttaaatagttttaaaaacccttcataaaactagaatcatcactaaattccttttaaagtgtactagtgt 507  Q
    ||||||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22955708 gtttcagtcatatttttttttctctttgcatttaaatagttttaaaaacccttcataaaactagaatcatcactaaattccttttaaagtgtactagtgt 22955807  T
Q  508 gttgtgtttgtcccttacatcactataaaag 538  Q
    |||||||||||||||||||||||||||||||    
T  22955808 gttgtgtttgtcccttacatcactataaaag 22955838  T

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Target: scaffold0015 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 289 - 538
Target Start/End: Complemental strand, 200008 - 199762
Alignment:
Q  289 ggtggataataataattgataacttaccatcagttactctaattggagagctacaatcagttactttggtgacaagaaatatggaaagaaatagaaacat 388  Q
    ||||||| ||| ||||||||||||||||||| |||||| |  || ||| | |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  200008 ggtggatcatattaattgataacttaccatcggttactttcttttgaggggtacaatcagttactttggtgacaagaaacatggaaagaaatagaaacat 199909  T
Q  389 aacacacacaaactttaaagtttcagtcatannnnnnnnnctctttgcatttaaatagttttaaaaacccttcataaaactagaatcatcactaaattcc 488  Q
    ||||||||||||||||| |||||||||||||         ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  199908 aacacacacaaactttagagtttcagtcatattttttt--ctctttgcatttaaatagttttaaaaacccttc-taaaactagaatcatcactaaattcc 199812  T
Q  489 ttttaaagtgtactagtgtgttgtgtttgtcccttacatcactataaaag 538  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  199811 ttttaaagtgtactagtgtgttgtgtttgtcccttacatcactataaaag 199762  T

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Target: scaffold0015; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 73 - 263
Target Start/End: Complemental strand, 200194 - 200002
Alignment:
Q  73 tgtacacatcggcctttacgacacctaagtttatacccatattccacttttggacaatctttatccgttgtacaaggacgagacactacaattgaaaaaa 172  Q
    ||||||||| | ||||||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||| |||||||||||||   |||||    
T  200194 tgtacacattgacctttacgacacctaagtttatatccatgttgcacttttggacaatctttatccgttgtacaaggatgagacactacaat--caaaaa 200097  T
Q  173 tagaatgaaacactgttactaaaacataataaa----atttcatgtataaactgtgaagtaaagaaggaaatttgagaaggaggaatgggtggat 263  Q
     ||||||||||| ||||||||||||||||||||    |||||||||||| ||| |||||||||||||||||||||||||||| |||  |||||||    
T  200096 cagaatgaaacattgttactaaaacataataaaatttatttcatgtatatactatgaagtaaagaaggaaatttgagaaggatgaaatggtggat 200002  T

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Target: scaffold0015; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 200290 - 200242
Alignment:
Q  15 tatattagagcttgaggaatattctagaaaatatatattgtacaactat 63  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||    
T  200290 tatattagagcttgtggaatattctagaaaagatatattgtacaactat 200242  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 364 - 413
Target Start/End: Original strand, 10980608 - 10980657
Alignment:
Q  364 gaaatatggaaagaaatagaaacataacacacacaaactttaaagtttca 413  Q
    ||||||||||||||||||||||||||||| | ||| |||||| |||||||    
T  10980608 gaaatatggaaagaaatagaaacataacataaacatactttagagtttca 10980657  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 483
Target Start/End: Complemental strand, 5727874 - 5727838
Alignment:
Q  447 ttttaaaaacccttcataaaactagaatcatcactaa 483  Q
    ||||||||||||||||||| | |||||||||||||||    
T  5727874 ttttaaaaacccttcataacattagaatcatcactaa 5727838  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 483
Target Start/End: Complemental strand, 5766034 - 5765998
Alignment:
Q  447 ttttaaaaacccttcataaaactagaatcatcactaa 483  Q
    ||||||||||||||||||| | |||||||||||||||    
T  5766034 ttttaaaaacccttcataacattagaatcatcactaa 5765998  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 483
Target Start/End: Complemental strand, 5768278 - 5768242
Alignment:
Q  447 ttttaaaaacccttcataaaactagaatcatcactaa 483  Q
    ||||||||||||||||||| | |||||||||||||||    
T  5768278 ttttaaaaacccttcataacattagaatcatcactaa 5768242  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 419
Target Start/End: Complemental strand, 35933457 - 35933398
Alignment:
Q  360 acaagaaatatggaaagaaatagaaacataacacacacaaactttaaagtttcagtcata 419  Q
    |||||||||||||| | |||||||| ||||||  | ||||||||||||||||||| ||||    
T  35933457 acaagaaatatggataaaaatagaatcataacgtaaacaaactttaaagtttcagccata 35933398  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 419
Target Start/End: Complemental strand, 30581000 - 30580938
Alignment:
Q  357 gtgacaagaaatatggaaagaaatagaaacataacacacacaaactttaaagtttcagtcata 419  Q
    ||||||| ||| ||||||| |||||||||||||||| | |||||||| | | |||||||||||    
T  30581000 gtgacaataaacatggaaataaatagaaacataacataaacaaacttaagaatttcagtcata 30580938  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 17971930 - 17971878
Alignment:
Q  359 gacaagaaatatggaaagaaatagaaacataacacacacaaactttaaagttt 411  Q
    ||||||||||||||||| |||||||| ||  ||| | ||||||||||||||||    
T  17971930 gacaagaaatatggaaataaatagaatcactacataaacaaactttaaagttt 17971878  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 359 - 411
Target Start/End: Complemental strand, 17977516 - 17977464
Alignment:
Q  359 gacaagaaatatggaaagaaatagaaacataacacacacaaactttaaagttt 411  Q
    ||||||||||||||||| |||||||| ||  ||| | ||||||||||||||||    
T  17977516 gacaagaaatatggaaataaatagaatcactacataaacaaactttaaagttt 17977464  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 483
Target Start/End: Complemental strand, 18651644 - 18651608
Alignment:
Q  447 ttttaaaaacccttcataaaactagaatcatcactaa 483  Q
    ||||||||||||||||||| | |||||||||||||||    
T  18651644 ttttaaaaacccttcataacattagaatcatcactaa 18651608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 447 - 483
Target Start/End: Complemental strand, 18691070 - 18691034
Alignment:
Q  447 ttttaaaaacccttcataaaactagaatcatcactaa 483  Q
    ||||||||||||||||||| | |||||||||||||||    
T  18691070 ttttaaaaacccttcataacattagaatcatcactaa 18691034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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