View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_90 (Length: 250)
Name: NF1272_low_90
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_90 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 6 - 245
Target Start/End: Complemental strand, 52481859 - 52481620
Alignment:
| Q |
6 |
aacttaactaacataattttggaagtcattgtaccttggatttcccttctttatcaactacaattttgaagggatgccaacttggatctttaagatattc |
105 |
Q |
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| T |
52481859 |
aacttaactaacataattttggaagtcattgtaccttggatttcccttctttatcaactacaattttgaagggatgccaacttggatctttaagacattc |
52481760 |
T |
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| Q |
106 |
atcccactttgagcaccactcgactgctttcaattgcacttcctcagaaactttattcctagcttttttcctaggccttgctttcccattcacctcatca |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52481759 |
atcccactttgagcaccactcgactgctttcaattgcacttcctcagaaactttattcctagcttttttcctaggccttgctttcccattcacctcatca |
52481660 |
T |
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| Q |
206 |
gaaaacttccgcttagctgcttccaaaaatggctcagtat |
245 |
Q |
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| T |
52481659 |
gaaaacttcctcttagctgcttccaaaaatggctcagtat |
52481620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 126
Target Start/End: Original strand, 16407693 - 16407755
Alignment:
| Q |
64 |
tacaattttgaagggatgccaacttggatctttaagatattcatcccactttgagcaccactc |
126 |
Q |
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| T |
16407693 |
tacaaatttgaacggatgccagcttggatcgctaagatattcatcccactttgagcaccactc |
16407755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 40752942 - 40752832
Alignment:
| Q |
27 |
gaagtcattgtaccttggatttcccttctttatcaactacaattttgaagggatgccaacttggatctttaagatattcatcccactttgagcaccactc |
126 |
Q |
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| T |
40752942 |
gaagtcattgtaccttggagttcccttctttatcggttacaactttgaacggatgccagcttggatctttaacacagtcatcccactttgagcaccactc |
40752843 |
T |
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| Q |
127 |
gactgctttca |
137 |
Q |
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| T |
40752842 |
gattgctttca |
40752832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 41471718 - 41471607
Alignment:
| Q |
31 |
tcattgtaccttggatttcccttctttatcaactacaattttgaagggatgccaacttggatctttaagatattcatcccactttgagcaccactcgact |
130 |
Q |
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| T |
41471718 |
tcattgtaccttggatttcccgtctttatcagtcacaactttgaacggatgccagctgggatctttaagacagtcatcccacgtagagcaccactcgatt |
41471619 |
T |
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| Q |
131 |
gctttcaattgc |
142 |
Q |
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| T |
41471618 |
gctttcaattgc |
41471607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 31 - 142
Target Start/End: Complemental strand, 41478606 - 41478495
Alignment:
| Q |
31 |
tcattgtaccttggatttcccttctttatcaactacaattttgaagggatgccaacttggatctttaagatattcatcccactttgagcaccactcgact |
130 |
Q |
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||||||||||||||||||||| ||||||||| |||| |||||| |||||||| || |||||||||||| | ||||||||| | ||||||||||||| | |
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| T |
41478606 |
tcattgtaccttggatttcccgtctttatcagtcacaactttgaacggatgccagctgggatctttaagacagtcatcccacgtagagcaccactcgatt |
41478507 |
T |
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| Q |
131 |
gctttcaattgc |
142 |
Q |
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|||||||||||| |
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| T |
41478506 |
gctttcaattgc |
41478495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 41485830 - 41485701
Alignment:
| Q |
15 |
aacataattttggaagtcattgtaccttggatttcccttctttatcaactacaattttgaagggatgccaacttggatctttaagatattcatcccactt |
114 |
Q |
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|||||||||| |||||| |||||||||||| ||||||||| | ||| ||||| |||||| |||||||| || ||||| |||| | | ||||||||||| |
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| T |
41485830 |
aacataatttgtgaagtcgttgtaccttggagttcccttctctgtcagttacaactttgaacggatgccagctaggatccttaacacagtcatcccactt |
41485731 |
T |
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| Q |
115 |
tgagcaccactcgactgctttcaattgcac |
144 |
Q |
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|||||||||||||| |||||||| |||||| |
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| T |
41485730 |
tgagcaccactcgattgctttcatttgcac |
41485701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 41471574 - 41471522
Alignment:
| Q |
187 |
tttcccattcacctcatcagaaaacttccgcttagctgcttccaaaaatggct |
239 |
Q |
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| T |
41471574 |
tttctcattcacttcatcagaaaactttctcttagctgcttccaaaaatggct |
41471522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 41478462 - 41478410
Alignment:
| Q |
187 |
tttcccattcacctcatcagaaaacttccgcttagctgcttccaaaaatggct |
239 |
Q |
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|||| ||||||| |||||||||||||| | ||||||||||||||||||||||| |
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| T |
41478462 |
tttctcattcacttcatcagaaaactttctcttagctgcttccaaaaatggct |
41478410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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