View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_91 (Length: 250)
Name: NF1272_low_91
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_91 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 14598394 - 14598152
Alignment:
| Q |
1 |
tgttgttaccaattgttcatcacatccttttggttttttatgttgattattagtctgggttcactcagtggtaagagcttagcattttaacctcgaggta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14598394 |
tgttgttaccaattgttcatcacatccttttggttttttatgttgattattagtctgggttcactcagtggtaagagcttagcattttaacctcgaggta |
14598295 |
T |
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| Q |
101 |
ctgagtttaaataccctctgggtcagttgtaacatggccattagcgtcgctttaatnnnnnnnnttcccttcctcaatttaaaagaaatatgtggttctc |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
14598294 |
ctgagtttaaataccctctgggacagttgtaacatggccattagcgtcgctttaataaaaaaaattcccttcctcaatttaaaagaaatatgtggttctc |
14598195 |
T |
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| Q |
201 |
tcgctttgaattctgatacatgtattgtaaaatgtctgtggtg |
243 |
Q |
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| T |
14598194 |
tctctttgaattctgatacatgtattgtaaaatgtctatggtg |
14598152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 67 - 144
Target Start/End: Complemental strand, 36198968 - 36198891
Alignment:
| Q |
67 |
agtggtaagagcttagcattttaacctcgaggtactgagtttaaataccctctgggtcagttgtaacatggccattag |
144 |
Q |
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| T |
36198968 |
agtggtaagagcttagccttgtaacctcaaggtactgagttcaaatcccctcggggatggttgtaaaatgaccattag |
36198891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 38821 - 38972
Alignment:
| Q |
1 |
tgttgttaccaattgttcatcacatccttttggttttttatgttgattattagtctggg-ttcactcagtggtaagagcttagcattttaacctcgaggt |
99 |
Q |
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| T |
38821 |
tgttgttaccaattgttcatcacatccttttggttttttatgttgattattagtctggggttcactcagtggtaagagcttagcattttaacctcgaggt |
38920 |
T |
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| Q |
100 |
actgagtttaaataccctctgggtcagttgtaacatggccattagcgtcgct |
151 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
38921 |
actgagtttaaataccctctgggacagttgtaacatggccattagtgtcgct |
38972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 18331977 - 18332128
Alignment:
| Q |
8 |
accaattgttcatcacatccttttgg--ttttttatgttgattattagtctgggtt-cactcagtggtaagagcttagcattttaacctcgaggtactga |
104 |
Q |
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||||||||||||||| |||||||||| ||||||||||||| |||||||||||||| | |||||||| |||||||||||||| ||||||| ||||||||| |
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| T |
18331977 |
accaattgttcatcatatccttttggatttttttatgttgagtattagtctgggtttctctcagtggcaagagcttagcattgtaacctcaaggtactga |
18332076 |
T |
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| Q |
105 |
gtttaaataccctctgggtcagttgtaacatggccattagcgtcgctttaat |
156 |
Q |
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| T |
18332077 |
gtttaaataccctctgggacagttaaagcatgaccattagtgtcactttaat |
18332128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 64 - 117
Target Start/End: Original strand, 31584890 - 31584943
Alignment:
| Q |
64 |
ctcagtggtaagagcttagcattttaacctcgaggtactgagtttaaataccct |
117 |
Q |
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| T |
31584890 |
ctcaatggtaagagcttagcattgtaacctcaaggtactgagttcaaatcccct |
31584943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 18332189 - 18332217
Alignment:
| Q |
204 |
ctttgaattctgatacatgtattgtaaaa |
232 |
Q |
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| T |
18332189 |
ctttgaattctgatacatgtattgtaaaa |
18332217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 156
Target Start/End: Original strand, 29333477 - 29333570
Alignment:
| Q |
63 |
actcagtggtaagagcttagcattttaacctcgaggtactgagtttaaataccctctgggtcagttgtaacatggccattagcgtcgctttaat |
156 |
Q |
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|||||| ||| |||||||||| |||||||||| |||||||||||| ||| ||||| ||| ||||||| |||| ||||| ||| ||||||| |
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| T |
29333477 |
actcagcggttagagcttagccttttaacctcaaggtactgagttcgaattccctcagggatggttgtaaaatggtgattagtgtcactttaat |
29333570 |
T |
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