View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_93 (Length: 246)
Name: NF1272_low_93
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_93 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 41717127 - 41717367
Alignment:
| Q |
1 |
tgtcttagttgtttatcaaagtgtgtatgagtatgactcggtcgaagaattatatttcaatgtcaaagttcaaatgtcatttaaa-taactgcctttcta |
99 |
Q |
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| T |
41717127 |
tgtcttagttgtttatcaaagtgtgtatgagtatgactcggtcgaagaattatatttcaatgtcaaagttcaaatgtcataaaaaataactgcctttcta |
41717226 |
T |
|
| Q |
100 |
gttgaaaataatatgaaagtcaacaatactattataatgaagagaaacgaatcacagaacatgacaatagcaatgcacacaaaaatttacctccggaagc |
199 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41717227 |
gttgaaaataatatgacagtcgacaatactattataatgaagagaaacgaatcacagaacatgacaatagcaatgcacacaaaaaattacctccggaagc |
41717326 |
T |
|
| Q |
200 |
tttttacggaacactacatccagccgtgcatcaagagtatt |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
41717327 |
tttttacggaacactacatccagccgtgcatcaagagtatt |
41717367 |
T |
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