View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1272_low_95 (Length: 243)
Name: NF1272_low_95
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1272_low_95 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 10251500 - 10251278
Alignment:
| Q |
21 |
agtagggtggccaacagatggtgacaaaaatgcaaatattcaaaatgcattaagattctataatggtcttttacctaggcttgcatcaaacaaaggtaca |
120 |
Q |
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| T |
10251500 |
agtagggtggccaacagatggtgacaaaaatgcaaatattcaaaatgcattaagattctataatggtcttttacctaggcttgcatcaaacaaaggtaca |
10251401 |
T |
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| Q |
121 |
ccaagaagacaaggttacattgaagtttatttatttggattaattgatgaagatgcaaaatccattgagccaggaaattttgaaagacattggggaatat |
220 |
Q |
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| T |
10251400 |
ccaagaagacaaggttacattgaagtttatttatttggattaattgatgaagatgcaaaatccattgagccaggaaattttgaaagacattggggaatat |
10251301 |
T |
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| Q |
221 |
ttagttttgatggtaaacctaaa |
243 |
Q |
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| T |
10251300 |
ttagttttgatggtaaacctaaa |
10251278 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 46353445 - 46353486
Alignment:
| Q |
28 |
tggccaacagatggtgacaaaaatgcaaatattcaaaatgca |
69 |
Q |
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| T |
46353445 |
tggccaacagatggtgataaaaatgcaaatattcaaaatgca |
46353486 |
T |
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