View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1272_low_96 (Length: 229)

Name: NF1272_low_96
Description: NF1272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1272_low_96
NF1272_low_96
[»] chr3 (16 HSPs)
chr3 (7-229)||(14598389-14598611)
chr3 (33-95)||(37273172-37273234)
chr3 (33-85)||(37155039-37155091)
chr3 (33-85)||(37200394-37200446)
chr3 (33-94)||(43115094-43115155)
chr3 (34-81)||(41724251-41724298)
chr3 (33-85)||(36200134-36200186)
chr3 (33-76)||(29771876-29771919)
chr3 (21-94)||(24281072-24281146)
chr3 (33-95)||(52323864-52323926)
chr3 (20-76)||(3044248-3044305)
chr3 (34-71)||(13804816-13804853)
chr3 (33-82)||(42745076-42745125)
chr3 (45-85)||(22232883-22232923)
chr3 (20-71)||(25925766-25925818)
chr3 (37-85)||(43397869-43397917)
[»] scaffold0012 (1 HSPs)
scaffold0012 (7-229)||(38604-38826)
[»] chr8 (22 HSPs)
chr8 (33-91)||(25869240-25869298)
chr8 (33-95)||(4055586-4055648)
chr8 (187-227)||(18331933-18331973)
chr8 (32-95)||(7918416-7918479)
chr8 (33-95)||(14949904-14949966)
chr8 (24-68)||(3600735-3600780)
chr8 (24-68)||(14339602-14339647)
chr8 (34-95)||(39551179-39551240)
chr8 (33-81)||(12361230-12361278)
chr8 (33-85)||(13000404-13000456)
chr8 (10-81)||(26479799-26479871)
chr8 (45-84)||(41620272-41620311)
chr8 (51-94)||(43709318-43709361)
chr8 (51-105)||(2107313-2107367)
chr8 (45-75)||(9572920-9572950)
chr8 (33-95)||(30191111-30191173)
chr8 (51-97)||(30987959-30988005)
chr8 (33-94)||(6950360-6950421)
chr8 (52-85)||(37740407-37740440)
chr8 (33-81)||(8255430-8255478)
chr8 (34-94)||(9540967-9541027)
chr8 (45-73)||(38421314-38421342)
[»] chr7 (24 HSPs)
chr7 (33-111)||(3468652-3468730)
chr7 (45-84)||(39568305-39568344)
chr7 (45-85)||(21247976-21248016)
chr7 (33-81)||(45078316-45078364)
chr7 (15-81)||(46082055-46082122)
chr7 (42-80)||(9872919-9872957)
chr7 (32-85)||(39360060-39360113)
chr7 (33-81)||(29290371-29290419)
chr7 (32-83)||(9423576-9423627)
chr7 (48-95)||(39334246-39334293)
chr7 (34-85)||(39539761-39539812)
chr7 (7-85)||(46281120-46281199)
chr7 (35-81)||(6857323-6857369)
chr7 (31-81)||(44686966-44687016)
chr7 (33-95)||(48157090-48157152)
chr7 (33-94)||(27121565-27121625)
chr7 (33-81)||(3500951-3500999)
chr7 (34-94)||(4001626-4001686)
chr7 (29-81)||(11721223-11721275)
chr7 (45-81)||(33645945-33645981)
chr7 (34-81)||(34035956-34036004)
chr7 (45-81)||(36537958-36537994)
chr7 (33-81)||(39551532-39551580)
chr7 (8-71)||(47134751-47134815)
[»] chr6 (21 HSPs)
chr6 (34-81)||(9027617-9027664)
chr6 (24-75)||(28467852-28467903)
chr6 (24-75)||(34735830-34735881)
chr6 (15-95)||(2460121-2460202)
chr6 (33-77)||(9667973-9668017)
chr6 (51-95)||(32917253-32917297)
chr6 (10-92)||(10616514-10616597)
chr6 (33-95)||(281818-281880)
chr6 (45-79)||(733163-733197)
chr6 (31-85)||(2034426-2034480)
chr6 (7-80)||(27909623-27909697)
chr6 (33-82)||(4080954-4081003)
chr6 (34-79)||(6647426-6647471)
chr6 (15-111)||(7785698-7785795)
chr6 (33-66)||(31583717-31583750)
chr6 (33-82)||(33887868-33887917)
chr6 (33-94)||(34939551-34939612)
chr6 (33-69)||(2160933-2160969)
chr6 (34-78)||(4246449-4246493)
chr6 (33-69)||(5566173-5566209)
chr6 (51-95)||(27595537-27595581)
[»] chr4 (14 HSPs)
chr4 (15-95)||(27123322-27123403)
chr4 (15-95)||(6987711-6987792)
chr4 (52-95)||(27725271-27725314)
chr4 (45-92)||(46415765-46415812)
chr4 (33-71)||(20656075-20656113)
chr4 (33-95)||(23819127-23819189)
chr4 (34-95)||(2996612-2996673)
chr4 (48-81)||(14986961-14986994)
chr4 (21-85)||(53673638-53673703)
chr4 (51-95)||(19429482-19429526)
chr4 (52-92)||(21953005-21953045)
chr4 (33-65)||(23990683-23990715)
chr4 (33-69)||(35743320-35743356)
chr4 (34-82)||(43412400-43412448)
[»] chr2 (18 HSPs)
chr2 (33-81)||(9878666-9878714)
chr2 (33-81)||(10285898-10285946)
chr2 (10-71)||(1939326-1939388)
chr2 (21-81)||(34652020-34652081)
chr2 (42-86)||(29936040-29936084)
chr2 (10-85)||(13056152-13056227)
chr2 (34-81)||(30538157-30538204)
chr2 (27-68)||(13234537-13234579)
chr2 (33-95)||(14299601-14299663)
chr2 (45-95)||(32821859-32821909)
chr2 (45-82)||(1160654-1160691)
chr2 (28-81)||(11344754-11344807)
chr2 (32-81)||(43065434-43065483)
chr2 (51-95)||(4550803-4550847)
chr2 (45-81)||(12215857-12215893)
chr2 (45-85)||(26281861-26281901)
chr2 (33-85)||(33525947-33525999)
chr2 (45-81)||(44606094-44606130)
[»] chr5 (18 HSPs)
chr5 (10-69)||(18543193-18543252)
chr5 (45-85)||(11700358-11700398)
chr5 (33-81)||(29590613-29590661)
chr5 (33-81)||(35963279-35963327)
chr5 (51-95)||(38047849-38047893)
chr5 (49-84)||(18906458-18906493)
chr5 (34-81)||(38766529-38766576)
chr5 (38-92)||(2092518-2092572)
chr5 (33-95)||(28586736-28586798)
chr5 (51-93)||(32172709-32172751)
chr5 (44-81)||(11457147-11457184)
chr5 (51-96)||(40499695-40499740)
chr5 (45-81)||(2092410-2092446)
chr5 (45-81)||(2569679-2569715)
chr5 (33-81)||(6109521-6109569)
chr5 (45-81)||(18700434-18700470)
chr5 (17-69)||(35055188-35055240)
chr5 (17-69)||(35071930-35071982)
[»] chr1 (26 HSPs)
chr1 (24-71)||(24968410-24968457)
chr1 (24-71)||(25432240-25432287)
chr1 (7-85)||(27140489-27140568)
chr1 (33-95)||(15579520-15579582)
chr1 (45-91)||(45327630-45327676)
chr1 (34-95)||(4868439-4868499)
chr1 (7-111)||(44422710-44422815)
chr1 (33-85)||(38266440-38266492)
chr1 (45-92)||(6262788-6262835)
chr1 (34-85)||(26185550-26185601)
chr1 (36-95)||(32515411-32515470)
chr1 (15-68)||(11695880-11695934)
chr1 (51-85)||(19412577-19412611)
chr1 (45-95)||(38867801-38867851)
chr1 (33-71)||(47917274-47917312)
chr1 (27-76)||(3223699-3223748)
chr1 (33-82)||(11211156-11211205)
chr1 (45-86)||(17628649-17628690)
chr1 (44-81)||(30418166-30418203)
chr1 (20-68)||(35017600-35017649)
chr1 (7-70)||(3224434-3224498)
chr1 (33-69)||(12477283-12477319)
chr1 (33-81)||(17420241-17420289)
chr1 (7-58)||(26916212-26916264)
chr1 (32-76)||(30371185-30371229)
chr1 (33-85)||(33722381-33722433)
[»] scaffold0024 (1 HSPs)
scaffold0024 (33-95)||(27614-27676)
[»] scaffold0147 (1 HSPs)
scaffold0147 (45-81)||(12688-12724)
[»] scaffold0044 (1 HSPs)
scaffold0044 (45-81)||(51936-51972)
[»] scaffold0311 (1 HSPs)
scaffold0311 (33-81)||(10601-10649)
[»] scaffold0286 (1 HSPs)
scaffold0286 (33-69)||(16148-16184)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 7 - 229
Target Start/End: Complemental strand, 14598611 - 14598389
Alignment:
Q  7 tttataacctattctggagtgcttatgaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacagacccaaatgtg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14598611 tttataacctattctggagtgcttatgaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacagacccaaatgtg 14598512  T
Q  107 tttataataagattaagtaagtcaatccaaacacaagtgtaattgctccttcagttctaaaatgagatatatgtaaatttcatgtggaggtttaagctcc 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14598511 tttataataagattaagtaagtcaatccaaacacaagtgtaattgctccttcagttctaaaatgagatatatgtaaatttcatgtggaggtttaagctcc 14598412  T
Q  207 tcttttgatcatatacatgttgt 229  Q
    |||||||||||||||||||||||    
T  14598411 tcttttgatcatatacatgttgt 14598389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 37273172 - 37273234
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| |||||||||    
T  37273172 gaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacag 37273234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 37155039 - 37155091
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactc 85  Q
    ||||||||| | ||||||||||||||||||| |||||||||||||||||||||    
T  37155039 gaaataagtagaaaacaacttatggacatgtaataagttatttccataaactc 37155091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 37200394 - 37200446
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactc 85  Q
    ||||||||| | ||||||||||||||||||| |||||||||||||||||||||    
T  37200394 gaaataagtagaaaacaacttatggacatgtaataagttatttccataaactc 37200446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 43115094 - 43115155
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaaca 94  Q
    |||||||| || |||||| |||||||||||||||||||| |||||||||||||  |||||||    
T  43115094 gaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaaca 43115155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 41724251 - 41724298
Alignment:
Q  34 aaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||||| || ||||||||||||||||||||||||||| |||||||||    
T  41724251 aaataagctgaaaacaacttatggacatgtcataagttgtttccataa 41724298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 36200134 - 36200186
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactc 85  Q
    |||||||| || ||||||||||||||||||||||||||| ||| || ||||||    
T  36200134 gaaataagctgaaaacaacttatggacatgtcataagttgtttacaaaaactc 36200186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 29771876 - 29771919
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttc 76  Q
    ||||||||||| |||||||||||||||||||| |||||| ||||    
T  29771876 gaaataagttgaaaacaacttatggacatgtcctaagttgtttc 29771919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 24281072 - 24281146
Alignment:
Q  21 tggagtgcttatgaaa-taagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaaca 94  Q
    ||||| |||||||||| ||||||| |||||||||||||| || ||||||||| ||| ||||| ||| | ||||||    
T  24281072 tggagagcttatgaaagtaagttgaaaacaacttatggagatatcataagttgttttcataagctctctcaaaca 24281146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 52323926 - 52323864
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    ||||||||||| ||||| ||||||||| |||||||| ||||||| |||| ||| | |||||||    
T  52323926 gaaataagttgaaaacagcttatggacgtgtcataaattatttcaataagctctcacaaacag 52323864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 3044305 - 3044248
Alignment:
Q  20 ctggagtgcttatgaaa-taagttggaaacaacttatggacatgtcataagttatttc 76  Q
    |||||| |||||||||| ||||||| ||||| |||||| |||||||||||||| ||||    
T  3044305 ctggagagcttatgaaaataagttgaaaacagcttatgaacatgtcataagttgtttc 3044248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 13804816 - 13804853
Alignment:
Q  34 aaataagttggaaacaacttatggacatgtcataagtt 71  Q
    |||||||||| ||||| |||||||||||||||||||||    
T  13804816 aaataagttgaaaacagcttatggacatgtcataagtt 13804853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 42745076 - 42745125
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaa 82  Q
    |||||||| || |||||||||||| |||||||||||||| ||| ||||||    
T  42745076 gaaataagatgaaaacaacttatgaacatgtcataagttgtttacataaa 42745125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 22232883 - 22232923
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataaactc 85  Q
    |||||| |||||||||||||||||||| |||| ||||||||    
T  22232883 aaacaatttatggacatgtcataagttgtttctataaactc 22232923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 25925766 - 25925818
Alignment:
Q  20 ctggagtgcttatgaaa-taagttggaaacaacttatggacatgtcataagtt 71  Q
    |||||| |||||||||| ||||||| ||||| |||||| ||||||||||||||    
T  25925766 ctggagagcttatgaaaataagttgaaaacagcttatgaacatgtcataagtt 25925818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 43397869 - 43397917
Alignment:
Q  37 taagttggaaacaacttatggacatgtcataagttatttccataaactc 85  Q
    ||||||| |||||| |||||||||||| ||||| |||||| ||||||||    
T  43397869 taagttgaaaacaatttatggacatgttataagctatttctataaactc 43397917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 38604 - 38826
Alignment:
Q  7 tttataacctattctggagtgcttatgaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacagacccaaatgtg 106  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  38604 tttataacctattctggagtgcttatgaaataagttagaaacaacttatggacatgtcataagttatttccataaactcctccaaacagactcaaatgtg 38703  T
Q  107 tttataataagattaagtaagtcaatccaaacacaagtgtaattgctccttcagttctaaaatgagatatatgtaaatttcatgtggaggtttaagctcc 206  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38704 tttataatatgattaagtaagtcaatccaaacacaagtgtaattgctccttcagttctaaaatgagatatatgtaaatttcatgtggaggtttaagctcc 38803  T
Q  207 tcttttgatcatatacatgttgt 229  Q
    |||||||||||||||||||||||    
T  38804 tcttttgatcatatacatgttgt 38826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 91
Target Start/End: Complemental strand, 25869298 - 25869240
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaa 91  Q
    |||||||| || |||||||||||||||||||||||||||||||||||| |||| |||||    
T  25869298 gaaataagctgaaaacaacttatggacatgtcataagttatttccatagactctcccaa 25869240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 4055648 - 4055586
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    |||||||| || |||||  ||||||||||||||||||||||||| |||||||| |||||||||    
T  4055648 gaaataagctgaaaacagtttatggacatgtcataagttatttctataaactctcccaaacag 4055586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 18331933 - 18331973
Alignment:
Q  187 catgtggaggtttaagctcctcttttgatcatatacatgtt 227  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  18331933 catgtggaggtttaagctcctcttttgatcatatgcatgtt 18331973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 95
Target Start/End: Complemental strand, 7918479 - 7918416
Alignment:
Q  32 tgaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    |||||||||||||||||| |||||| ||||||| |||||| ||| ||||| ||| |||||||||    
T  7918479 tgaaataagttggaaacagcttatgaacatgtcttaagttgttttcataagctctcccaaacag 7918416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 14949904 - 14949966
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    |||||||| || ||||| ||||||||||||||||||||||||| ||||| ||| || ||||||    
T  14949904 gaaataagctgaaaacagcttatggacatgtcataagttattttcataagctctcctaaacag 14949966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 3600780 - 3600735
Alignment:
Q  24 agtgcttatgaaa-taagttggaaacaacttatggacatgtcataa 68  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  3600780 agtgcttatgaaaataagttgaaaacaacttatggacatgtcataa 3600735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 14339647 - 14339602
Alignment:
Q  24 agtgcttatgaaa-taagttggaaacaacttatggacatgtcataa 68  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||    
T  14339647 agtgcttatgaaaataagttgaaaacaacttatggacatgtcataa 14339602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 39551240 - 39551179
Alignment:
Q  34 aaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    |||||||||  ||||| ||| ||||||||||||||||| |||||||||| || |||||||||    
T  39551240 aaataagttaaaaacagcttttggacatgtcataagttgtttccataaattctcccaaacag 39551179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 12361230 - 12361278
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||||||||| ||||| ||||||||||||||||||| |||||| ||||    
T  12361230 gaaataagttgaaaacagcttatggacatgtcataagctatttctataa 12361278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 13000456 - 13000404
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactc 85  Q
    |||||||| || ||||||||| ||||||||||||||||| || ||||||||||    
T  13000456 gaaataagctgaaaacaacttgtggacatgtcataagttgttaccataaactc 13000404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 26479799 - 26479871
Alignment:
Q  10 ataacctattctggagtgcttat-gaaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    |||||||||||||||| |||||| |||||| | || ||| ||||||| |||||| |||||||| |||||||||    
T  26479799 ataacctattctggagagcttatggaaatacgctgaaaaaaacttatagacatgacataagttgtttccataa 26479871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 41620311 - 41620272
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataaact 84  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  41620311 aaacaacttatggacatgtcataatttgtttccataaact 41620272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 94
Target Start/End: Original strand, 43709318 - 43709361
Alignment:
Q  51 cttatggacatgtcataagttatttccataaactcccccaaaca 94  Q
    ||||| ||||||||||||||||||||||||| ||| ||||||||    
T  43709318 cttatagacatgtcataagttatttccataagctcacccaaaca 43709361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 105
Target Start/End: Complemental strand, 2107367 - 2107313
Alignment:
Q  51 cttatggacatgtcataagttatttccataaactcccccaaacagacccaaatgt 105  Q
    |||||||||||| |||||||| || |||||||||||||||| ||| | |||||||    
T  2107367 cttatggacatgccataagttgttcccataaactcccccaaccagtcacaaatgt 2107313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 75
Target Start/End: Original strand, 9572920 - 9572950
Alignment:
Q  45 aaacaacttatggacatgtcataagttattt 75  Q
    |||||||||||||||||||||||||||||||    
T  9572920 aaacaacttatggacatgtcataagttattt 9572950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 30191173 - 30191111
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    |||||||| || |||||| || || |||||||||||||| ||||||||| ||| |||||||||    
T  30191173 gaaataagctgaaaacaagttttgaacatgtcataagttgtttccataagctctcccaaacag 30191111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 97
Target Start/End: Complemental strand, 30988005 - 30987959
Alignment:
Q  51 cttatggacatgtcataagttatttccataaactcccccaaacagac 97  Q
    ||||||||||||||||||||| ||||||||| ||| | |||||||||    
T  30988005 cttatggacatgtcataagttgtttccataagctctctcaaacagac 30987959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 6950360 - 6950421
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaaca 94  Q
    |||||||| || ||||||||||| ||||||||||| ||| ||| ||||| ||| ||||||||    
T  6950360 gaaataagctgaaaacaacttatcgacatgtcataggttgtttacataagctctcccaaaca 6950421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 37740440 - 37740407
Alignment:
Q  52 ttatggacatgtcataagttatttccataaactc 85  Q
    |||||||||||||||||||| |||||||||||||    
T  37740440 ttatggacatgtcataagttgtttccataaactc 37740407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 8255430 - 8255478
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    |||||||| || |||||||||||| ||||||||| |||| |||||||||    
T  8255430 gaaataaggtgaaaacaacttatgcacatgtcattagttgtttccataa 8255478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 9541027 - 9540967
Alignment:
Q  34 aaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaaca 94  Q
    ||||||| || | |||| |||||||||||||||||| | ||||||||| ||| ||||||||    
T  9541027 aaataagctgaacacaaattatggacatgtcataagatgtttccataagctctcccaaaca 9540967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 73
Target Start/End: Original strand, 38421314 - 38421342
Alignment:
Q  45 aaacaacttatggacatgtcataagttat 73  Q
    |||||||||||||||||||||||||||||    
T  38421314 aaacaacttatggacatgtcataagttat 38421342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 3468652 - 3468730
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacagacccaaatgtgtttat 111  Q
    |||||||||||||||||||||||||||||||||| |||| ||||||  ||||| || |||||| | |||| ||||||||    
T  3468652 gaaataagttggaaacaacttatggacatgtcattagttgtttccaacaactctccgaaacagtctcaaaagtgtttat 3468730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 45 - 84
Target Start/End: Complemental strand, 39568344 - 39568305
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataaact 84  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39568344 aaacaacttatggacatgtcataagttatttccataaact 39568305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 45 - 85
Target Start/End: Original strand, 21247976 - 21248016
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataaactc 85  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  21247976 aaacaacttatgaacatgtcataagttatttccataaactc 21248016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 45078316 - 45078364
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||||||||| ||||| |||||||||||||||||||||||||| ||||    
T  45078316 gaaataagttgaaaacagcttatggacatgtcataagttatttctataa 45078364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 81
Target Start/End: Original strand, 46082055 - 46082122
Alignment:
Q  15 ctattctggagtgcttatgaaa-taagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||||||||| |||||||||| |||| || ||||||||||||| ||||||||||||| ||| |||||    
T  46082055 ctattctggagagcttatgaaaataagctgaaaacaacttatggtcatgtcataagttgttttcataa 46082122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 9872919 - 9872957
Alignment:
Q  42 tggaaacaacttatggacatgtcataagttatttccata 80  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  9872919 tggaaacaacttatggacatgtcataagttgtttccata 9872957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 39360060 - 39360113
Alignment:
Q  32 tgaaataagttggaaacaacttatggacatgtcataagttatttccataaactc 85  Q
    ||||||||| || || ||||||||||| |||||||||||| |||||||||||||    
T  39360060 tgaaataagctgaaagcaacttatggatatgtcataagttgtttccataaactc 39360113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 29290371 - 29290419
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    |||||| |||| ||||| ||||||||||||||||||||| |||||||||    
T  29290371 gaaatatgttgaaaacagcttatggacatgtcataagttgtttccataa 29290419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 9423627 - 9423576
Alignment:
Q  32 tgaaataagttggaaacaacttatggacatgtcataagttatttccataaac 83  Q
    ||||||||| || |||||||||||| ||||||||||| || |||||||||||    
T  9423627 tgaaataagctgaaaacaacttatgaacatgtcataaattgtttccataaac 9423576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 39334246 - 39334293
Alignment:
Q  48 caacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    ||||||||||||||||||||| || |||||||||||||  ||||||||    
T  39334246 caacttatggacatgtcataaattgtttccataaactctaccaaacag 39334293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 39539812 - 39539761
Alignment:
Q  34 aaataagttggaaacaacttatggacatgtcataagttatttccataaactc 85  Q
    ||||||| || ||||| ||||||||||||||||||||| ||||| |||||||    
T  39539812 aaataagctgaaaacagcttatggacatgtcataagttgtttccgtaaactc 39539761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 46281199 - 46281120
Alignment:
Q  7 tttataacctattctggagtgcttat-gaaataagttggaaacaacttatggacatgtcataagttatttccataaactc 85  Q
    ||||||| ||||||||||| ||||||  ||||||| || |||||| |||| |||||| |||||||| ||||| |||||||    
T  46281199 tttataagctattctggagggcttatataaataagctgaaaacaatttatagacatggcataagttgtttccgtaaactc 46281120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 6857369 - 6857323
Alignment:
Q  35 aataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||||||| |||||||||||||||||| |||||| | |||||||||    
T  6857369 aataagttgaaaacaacttatggacatggcataagctgtttccataa 6857323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 44686966 - 44687016
Alignment:
Q  31 atgaaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||| ||||||| ||||| || |||||||||||||||||| |||||||||    
T  44686966 atgaattaagttgaaaacagctcatggacatgtcataagttgtttccataa 44687016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 48157152 - 48157090
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    |||||||| || ||||| |||||||||||| |||||||| |||| |||| ||| |||||||||    
T  48157152 gaaataagctgaaaacagcttatggacatggcataagttgtttctataagctctcccaaacag 48157090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 27121625 - 27121565
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaaca 94  Q
    |||| |||||| ||||| ||||| || |||||||||| ||||||||||||||| ||||||||    
T  27121625 gaaacaagttgaaaacagcttattga-atgtcataagctatttccataaactctcccaaaca 27121565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 3500999 - 3500951
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    |||||||| || ||||| || ||| ||||||||||||||||||||||||    
T  3500999 gaaataagctgaaaacagctgatgtacatgtcataagttatttccataa 3500951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 4001626 - 4001686
Alignment:
Q  34 aaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaaca 94  Q
    ||||||| || ||| ||||||| | ||||||||||||| |||||||||| || ||||||||    
T  4001626 aaataagctgaaaaaaacttattggcatgtcataagttgtttccataaaatctcccaaaca 4001686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 11721275 - 11721223
Alignment:
Q  29 ttatgaaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    |||||||||||| || |||||| |||| ||||||||||||| |||||| ||||    
T  11721275 ttatgaaataagatgaaaacaaattatcgacatgtcataagctatttctataa 11721223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 33645981 - 33645945
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  33645981 aaacaacttatagacatgtcataagttgtttccataa 33645945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 34035956 - 34036004
Alignment:
Q  34 aaataagttggaaacaacttatggac-atgtcataagttatttccataa 81  Q
    |||||||||| |||||||||||| || |||||||||||||||| |||||    
T  34035956 aaataagttgaaaacaacttatgaacaatgtcataagttattttcataa 34036004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 36537958 - 36537994
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataa 81  Q
    |||||||||||| |||||||||||||| |||||||||    
T  36537958 aaacaacttatgaacatgtcataagttgtttccataa 36537994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 39551580 - 39551532
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    |||||||| ||  |||| ||||||||||||||||||||| |||||||||    
T  39551580 gaaataagctgacaacaccttatggacatgtcataagttgtttccataa 39551532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 47134815 - 47134751
Alignment:
Q  8 ttataacctattctggagtgcttatgaaa-taagttggaaacaacttatggacatgtcataagtt 71  Q
    |||||| ||||||| ||  |||||||||| |||| || ||||||||||||||| |||||||||||    
T  47134815 ttataagctattcttgaaagcttatgaaaataagctgaaaacaacttatggacgtgtcataagtt 47134751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 9027617 - 9027664
Alignment:
Q  34 aaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||    
T  9027617 aaataagctgaaaacaacttatggacatgtcataagttatttccataa 9027664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 28467852 - 28467903
Alignment:
Q  24 agtgcttatgaaataagttggaaacaacttatggacatgtcataagttattt 75  Q
    ||||||||||||||||| | |||||| |||||||||||||||||||||||||    
T  28467852 agtgcttatgaaataagctagaaacagcttatggacatgtcataagttattt 28467903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 34735881 - 34735830
Alignment:
Q  24 agtgcttatgaaataagttggaaacaacttatggacatgtcataagttattt 75  Q
    ||||||||||||||||| | |||||| |||||||||||||||||||||||||    
T  34735881 agtgcttatgaaataagctagaaacagcttatggacatgtcataagttattt 34735830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 2460202 - 2460121
Alignment:
Q  15 ctattctggagtgcttatg-aaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    ||||| ||||| ||||||| |||||||||| ||||||||||  ||||||||||||||| ||||||||| ||| | |||||||    
T  2460202 ctattatggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacag 2460121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 9668017 - 9667973
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttcc 77  Q
    ||||||||||| ||||| ||||||||||||||||||||| |||||    
T  9668017 gaaataagttgaaaacagcttatggacatgtcataagttgtttcc 9667973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 32917253 - 32917297
Alignment:
Q  51 cttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    ||||||||||||||||||||| ||||||||| ||| |||||||||    
T  32917253 cttatggacatgtcataagttgtttccataagctctcccaaacag 32917297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 92
Target Start/End: Complemental strand, 10616597 - 10616514
Alignment:
Q  10 ataacctattctggagtgcttatgaaa-taagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaa 92  Q
    |||| ||||| ||||| |||||| ||| |||| || | |||||||| |||||||||||||||| ||||||||| ||| ||||||    
T  10616597 ataagctattttggagagcttataaaaataagctgaacacaacttacggacatgtcataagttgtttccataagctctcccaaa 10616514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 281880 - 281818
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    |||||||| || ||||||||||| |||||||||||||||  |||||| | ||| |||||||||    
T  281880 gaaataagctgaaaacaacttatagacatgtcataagttgcttccattagctctcccaaacag 281818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 79
Target Start/End: Complemental strand, 733197 - 733163
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccat 79  Q
    ||||||||| |||||||||||||||||||||||||    
T  733197 aaacaacttgtggacatgtcataagttatttccat 733163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 2034480 - 2034426
Alignment:
Q  31 atgaaataagttggaaacaacttatggacatgtcataagttatttccataaactc 85  Q
    |||||||||| || ||||| |||||||| |||||||||| | |||||||||||||    
T  2034480 atgaaataagctgaaaacagcttatggaaatgtcataagctgtttccataaactc 2034426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 27909697 - 27909623
Alignment:
Q  7 tttataacctattctggagtgcttatg-aaataagttggaaacaacttatggacatgtcataagttatttccata 80  Q
    ||||||| || | |||||| ||||||| ||||||| || |||||||||||||||||||||||  || ||||||||    
T  27909697 tttataagctttactggagagcttatggaaataagctgaaaacaacttatggacatgtcatatattgtttccata 27909623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 4080954 - 4081003
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaa 82  Q
    ||||||||||| |||||||||||| ||||| |||||||| ||| ||||||    
T  4080954 gaaataagttgaaaacaacttatgaacatggcataagttgttttcataaa 4081003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 6647426 - 6647471
Alignment:
Q  34 aaataagttggaaacaacttatggacatgtcataagttatttccat 79  Q
    |||||||||| ||||| |||||| |||||||||||| |||||||||    
T  6647426 aaataagttgaaaacatcttatgaacatgtcataagctatttccat 6647471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 7785795 - 7785698
Alignment:
Q  15 ctattctggagtgcttatg-aaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacagacccaaatgtgtttat 111  Q
    ||||| ||||| ||||||| ||||||| || ||||||||||| ||||||||||||| | ||||  ||||||||  ||| ||| |||||| ||| ||||    
T  7785795 ctattttggagagcttatggaaataagctgaaaacaacttatagacatgtcataagctgtttctgtaaactccttcaatcagtcccaaaagtgcttat 7785698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 31583717 - 31583750
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcat 66  Q
    ||||||||||| ||||||||||||||||||||||    
T  31583717 gaaataagttgaaaacaacttatggacatgtcat 31583750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 33887868 - 33887917
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaa 82  Q
    ||||||||||| ||||||||| || |||||||||||| ||||| ||||||    
T  33887868 gaaataagttgaaaacaacttgtgaacatgtcataagctattttcataaa 33887917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 34939551 - 34939612
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaaca 94  Q
    |||||||| || |||||||||| |||| ||||||||||| ||||||||| ||| | ||||||    
T  34939551 gaaataagctgaaaacaacttacggacgtgtcataagttgtttccataagctctctcaaaca 34939612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 2160969 - 2160933
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataag 69  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  2160969 gaaataagttgaaaacaacttatggacatgtcgtaag 2160933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 4246449 - 4246493
Alignment:
Q  34 aaataagttggaaacaacttatggacatgtcataagttatttcca 78  Q
    |||||||||| ||||| |||||||||||||||| |||| ||||||    
T  4246449 aaataagttgaaaacagcttatggacatgtcatgagttgtttcca 4246493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 5566209 - 5566173
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataag 69  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  5566209 gaaataagttgaaaacaacttatggacatgtaataag 5566173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 27595581 - 27595537
Alignment:
Q  51 cttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    |||||| |||||||||||||| |||||||||| || |||||||||    
T  27595581 cttatgaacatgtcataagttgtttccataaattctcccaaacag 27595537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 27123403 - 27123322
Alignment:
Q  15 ctattctggagtgcttatg-aaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    ||||| ||||| ||||||| |||||||||| ||||||||||  ||||||||||||||| ||||||||| ||| | |||||||    
T  27123403 ctattatggagagcttatggaaataagttgaaaacaacttaaagacatgtcataagttgtttccataagctctctcaaacag 27123322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 6987792 - 6987711
Alignment:
Q  15 ctattctggagtgcttatg-aaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    |||| |||||| ||||||| |||||||||| ||| |  |||||||||||||||||||| | ||||||| ||| |||||||||    
T  6987792 ctatcctggagagcttatggaaataagttgaaaatagtttatggacatgtcataagttgtatccataagctctcccaaacag 6987711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 27725271 - 27725314
Alignment:
Q  52 ttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    |||||||||||||||||||||||||||||| ||| | |||||||    
T  27725271 ttatggacatgtcataagttatttccataagctctctcaaacag 27725314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 46415812 - 46415765
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataaactcccccaaa 92  Q
    ||||||||||||||||||||||| ||| ||| ||||||||| ||||||    
T  46415812 aaacaacttatggacatgtcataggttgtttgcataaactctcccaaa 46415765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 20656075 - 20656113
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagtt 71  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  20656075 gaaataagttgaagacaacttatggacatgtcataagtt 20656113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 23819127 - 23819189
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    |||||||| || ||||||||||||||||||||||||| | ||| | |||||||  ||||||||    
T  23819127 gaaataagatgaaaacaacttatggacatgtcataagctgttttcttaaactcttccaaacag 23819189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 2996612 - 2996673
Alignment:
Q  34 aaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    |||||||||| ||| | ||||||||||||||||||||| ||| ||||| ||| | |||||||    
T  2996612 aaataagttgaaaaaagcttatggacatgtcataagttgttttcataagctctctcaaacag 2996673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 14986994 - 14986961
Alignment:
Q  48 caacttatggacatgtcataagttatttccataa 81  Q
    |||||||||||||||||||||||||||| |||||    
T  14986994 caacttatggacatgtcataagttattttcataa 14986961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 53673703 - 53673638
Alignment:
Q  21 tggagtgcttatg-aaataagttggaaacaacttatggacatgtcataagttatttccataaactc 85  Q
    ||||| ||||||| ||||||| || ||||||||||||||||| | ||| ||| |||||||||||||    
T  53673703 tggagagcttatgtaaataagctgaaaacaacttatggacatatgatatgttgtttccataaactc 53673638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 19429526 - 19429482
Alignment:
Q  51 cttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    ||||||||||||||||||||| | ||||||| ||| |||||||||    
T  19429526 cttatggacatgtcataagttttctccataagctctcccaaacag 19429482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 21953005 - 21953045
Alignment:
Q  52 ttatggacatgtcataagttatttccataaactcccccaaa 92  Q
    |||||||||||||||||||| ||||||||| ||| ||||||    
T  21953005 ttatggacatgtcataagttctttccataagctctcccaaa 21953045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 23990715 - 23990683
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtca 65  Q
    ||||||||||||||||||||||| |||||||||    
T  23990715 gaaataagttggaaacaacttatagacatgtca 23990683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 35743320 - 35743356
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataag 69  Q
    |||||||||||||||||||||||  ||||||||||||    
T  35743320 gaaataagttggaaacaacttataaacatgtcataag 35743356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 43412400 - 43412448
Alignment:
Q  34 aaataagttggaaacaacttatggacatgtcataagttatttccataaa 82  Q
    ||||||| ||||||||| |||||||||||||||| | |||||| |||||    
T  43412400 aaataagatggaaacaatttatggacatgtcatatgctatttctataaa 43412448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 9878714 - 9878666
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||||||| | ||||||||||||||||||||||||||| |||||||||    
T  9878714 gaaataagtcgaaaacaacttatggacatgtcataagttgtttccataa 9878666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 10285898 - 10285946
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||||||||| ||||| ||||||||||||||||||||||||| |||||    
T  10285898 gaaataagttgaaaacagcttatggacatgtcataagttattttcataa 10285946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 1939388 - 1939326
Alignment:
Q  10 ataacctattctggagtgcttatg-aaataagttggaaacaacttatggacatgtcataagtt 71  Q
    |||| |||| |||||| ||||||| |||||||||| ||||| |||||||||||||||||||||    
T  1939388 ataagctatactggagagcttatggaaataagttgaaaacagcttatggacatgtcataagtt 1939326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 34652081 - 34652020
Alignment:
Q  21 tggagtgcttatg-aaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||| ||||||| |||||||||| ||||| ||||||||||||||||||||| |||| ||||    
T  34652081 tggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtttctataa 34652020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 29936040 - 29936084
Alignment:
Q  42 tggaaacaacttatggacatgtcataagttatttccataaactcc 86  Q
    ||||||||||||||||||||||| |||||| ||||||||| ||||    
T  29936040 tggaaacaacttatggacatgtcttaagttgtttccataagctcc 29936084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 85
Target Start/End: Original strand, 13056152 - 13056227
Alignment:
Q  10 ataacctattctggagtgcttatgaaataagttggaaacaacttatggacatgtcataagttatttccataaactc 85  Q
    |||| ||||| ||||| ||||| |||||||| |  |||||||||||||||||| |||||| |  ||||||||||||    
T  13056152 ataagctattatggagagcttacgaaataagctacaaacaacttatggacatgccataagctgcttccataaactc 13056227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 30538204 - 30538157
Alignment:
Q  34 aaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||||| || ||||||||||||||||||||||||||| |||| ||||    
T  30538204 aaataagctgaaaacaacttatggacatgtcataagttgtttctataa 30538157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 68
Target Start/End: Original strand, 13234537 - 13234579
Alignment:
Q  27 gcttatgaa-ataagttggaaacaacttatggacatgtcataa 68  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  13234537 gcttatgaagataagttgaaaacaacttatggacatgtcataa 13234579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 14299663 - 14299601
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    |||||||| || ||||||  |||||| |||||||||||| |||||||||||||  ||||||||    
T  14299663 gaaataagctgaaaacaatgtatggatatgtcataagttgtttccataaactcttccaaacag 14299601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 32821859 - 32821909
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    ||||| ||||||||||||||||||||| |||| ||||||||  ||||||||    
T  32821859 aaacagcttatggacatgtcataagttgtttctataaactcttccaaacag 32821909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 1160691 - 1160654
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataaa 82  Q
    ||||||||||||||||||||||| ||| ||||||||||    
T  1160691 aaacaacttatggacatgtcataggttgtttccataaa 1160654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 11344807 - 11344754
Alignment:
Q  28 cttatgaaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||||| | |||||| |||||  |||||||||||||||||||| |||||||||    
T  11344807 cttatgatacaagttgaaaacagtttatggacatgtcataagttgtttccataa 11344754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 43065483 - 43065434
Alignment:
Q  32 tgaaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||||||| || |||||| |||||||||||||||||||| ||| |||||    
T  43065483 tgaaataagctgaaaacaatttatggacatgtcataagttgttttcataa 43065434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 95
Target Start/End: Original strand, 4550803 - 4550847
Alignment:
Q  51 cttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    |||||| |||||||||||||| ||||||||| ||| |||||||||    
T  4550803 cttatgaacatgtcataagttgtttccataagctctcccaaacag 4550847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 12215857 - 12215893
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  12215857 aaacagcttatggacatgtcataagctatttccataa 12215893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 26281901 - 26281861
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataaactc 85  Q
    |||||||| |||||||||||||||| | |||||||||||||    
T  26281901 aaacaactaatggacatgtcataagctgtttccataaactc 26281861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 33525999 - 33525947
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactc 85  Q
    |||||||| || || |||||||||||||||| ||||||| ||||||| |||||    
T  33525999 gaaataagctgaaaccaacttatggacatgttataagttgtttccatgaactc 33525947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 44606130 - 44606094
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  44606130 aaacaacttatggacatgtcataagttgttttcataa 44606094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 18543252 - 18543193
Alignment:
Q  10 ataacctattctggagtgcttatgaaataagttggaaacaacttatggacatgtcataag 69  Q
    |||| |||| |||||| |||||||||||||| || |||||||| ||||||||||||||||    
T  18543252 ataagctatcctggagagcttatgaaataagctgaaaacaactcatggacatgtcataag 18543193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 85
Target Start/End: Complemental strand, 11700398 - 11700358
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataaactc 85  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  11700398 aaacagcttatggacatgtcataagttgtttccataaactc 11700358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 29590661 - 29590613
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||||||||| |||||||||||||||| |||||||||| | |||||||    
T  29590661 gaaataagttgaaaacaacttatggacaagtcataagttttgtccataa 29590613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 35963279 - 35963327
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    |||||||| || ||||||||||||||||||||||| | |||||||||||    
T  35963279 gaaataagctgaaaacaacttatggacatgtcatacgctatttccataa 35963327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 38047893 - 38047849
Alignment:
Q  51 cttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    ||||||||||||||||||||| ||||||||| ||| |||||||||    
T  38047893 cttatggacatgtcataagttgtttccataagctctcccaaacag 38047849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 84
Target Start/End: Original strand, 18906458 - 18906493
Alignment:
Q  49 aacttatggacatgtcataagttatttccataaact 84  Q
    ||||||||||||||||||||||||| ||||||||||    
T  18906458 aacttatggacatgtcataagttatgtccataaact 18906493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 38766576 - 38766529
Alignment:
Q  34 aaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    |||||||| | ||||||||||||||| ||||||||||| |||||||||    
T  38766576 aaataagtcgaaaacaacttatggacgtgtcataagttgtttccataa 38766529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 2092572 - 2092518
Alignment:
Q  38 aagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaa 92  Q
    |||||| |||||||||||||||||| |||||||| |||| |||| ||| ||||||    
T  2092572 aagttgaaaacaacttatggacatgccataagttgtttcaataagctctcccaaa 2092518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 28586798 - 28586736
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    |||||||| || ||||| |||| ||| |||||||||| ||||||||||| ||| |||||||||    
T  28586798 gaaataagctgaaaacagcttacggatatgtcataagctatttccataagctctcccaaacag 28586736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 93
Target Start/End: Original strand, 32172709 - 32172751
Alignment:
Q  51 cttatggacatgtcataagttatttccataaactcccccaaac 93  Q
    ||||||||||||||||||||| ||||||||| ||| |||||||    
T  32172709 cttatggacatgtcataagttgtttccataagctctcccaaac 32172751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 11457147 - 11457184
Alignment:
Q  44 gaaacaacttatggacatgtcataagttatttccataa 81  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  11457147 gaaacagcttatggacatgtcataagttgtttccataa 11457184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 96
Target Start/End: Complemental strand, 40499740 - 40499695
Alignment:
Q  51 cttatggacatgtcataagttatttccataaactcccccaaacaga 96  Q
    ||||||||||||||||||||| ||||||||| ||| || |||||||    
T  40499740 cttatggacatgtcataagttgtttccataagctctcctaaacaga 40499695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 2092410 - 2092446
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  2092410 aaacagcttatggacatgtcataagctatttccataa 2092446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 2569715 - 2569679
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  2569715 aaacagcttatggacatgtcataagctatttccataa 2569679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 6109521 - 6109569
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    |||||||| || ||||||||||||||||| |||||| || |||||||||    
T  6109521 gaaataagctgaaaacaacttatggacatatcataatttttttccataa 6109569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 81
Target Start/End: Original strand, 18700434 - 18700470
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  18700434 aaacaacttatagacatgtcataagttgtttccataa 18700470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 35055188 - 35055240
Alignment:
Q  17 attctggagtgcttatgaaataagttggaaacaacttatggacatgtcataag 69  Q
    |||||||||  ||||||||||||| || |||||||||||| |||||| |||||    
T  35055188 attctggagaacttatgaaataagctgcaaacaacttatgaacatgtaataag 35055240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Original strand, 35071930 - 35071982
Alignment:
Q  17 attctggagtgcttatgaaataagttggaaacaacttatggacatgtcataag 69  Q
    |||||||||  ||||||||||||| || |||||||||||| |||||| |||||    
T  35071930 attctggagaacttatgaaataagctgcaaacaacttatgaacatgtaataag 35071982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 24968457 - 24968410
Alignment:
Q  24 agtgcttatgaaataagttggaaacaacttatggacatgtcataagtt 71  Q
    ||||||||||||||||| | |||||| |||||||||||||||||||||    
T  24968457 agtgcttatgaaataagctagaaacagcttatggacatgtcataagtt 24968410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 25432240 - 25432287
Alignment:
Q  24 agtgcttatgaaataagttggaaacaacttatggacatgtcataagtt 71  Q
    ||||||||||||||||| | |||||| |||||||||||||||||||||    
T  25432240 agtgcttatgaaataagctagaaacagcttatggacatgtcataagtt 25432287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 85
Target Start/End: Original strand, 27140489 - 27140568
Alignment:
Q  7 tttataacctattctggagtgcttatg-aaataagttggaaacaacttatggacatgtcataagttatttccataaactc 85  Q
    ||||||| ||||  ||||| ||||||| ||||||| || ||||||||||||||||||||||||| | ||||| |||||||    
T  27140489 tttataagctatcatggagagcttatgcaaataagctgaaaacaacttatggacatgtcataagctgtttccttaaactc 27140568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 15579520 - 15579582
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    |||||||| ||  |||||||||||||||||||||||||| |||||| || ||| |||||||||    
T  15579520 gaaataagctgagaacaacttatggacatgtcataagttgtttccacaagctctcccaaacag 15579582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 91
Target Start/End: Original strand, 45327630 - 45327676
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataaactcccccaa 91  Q
    |||||| |||||||||||||||||||| ||||||||| |||||||||    
T  45327630 aaacaatttatggacatgtcataagttgtttccataagctcccccaa 45327676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 95
Target Start/End: Original strand, 4868439 - 4868499
Alignment:
Q  34 aaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    |||||||||| ||||||||||| ||||||||||||||| ||| ||||||||| | |||||||    
T  4868439 aaataagttgaaaacaacttattgacatgtcataagttgttt-cataaactctctcaaacag 4868499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 44422710 - 44422815
Alignment:
Q  7 tttataacctattctggagtgcttatgaaa-taagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacagacccaaatgt 105  Q
    ||||||| |||| |||||| |||||||||| |||| || |  || ||||||||||||||||||| ||||| ||||| ||| |||| |||| | |||| ||    
T  44422710 tttataagctatcctggagagcttatgaaaataagctgtagtcagcttatggacatgtcataagctattttcataagctctcccagacagtctcaaaagt 44422809  T
Q  106 gtttat 111  Q
    ||||||    
T  44422810 gtttat 44422815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 38266492 - 38266440
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactc 85  Q
    ||||||||||| |||||| ||||| ||||||| |||||||||| |||||||||    
T  38266492 gaaataagttgaaaacaaattatgaacatgtcgtaagttattttcataaactc 38266440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 6262788 - 6262835
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataaactcccccaaa 92  Q
    ||||||||||||||||| ||||||||||||| ||||| ||| ||||||    
T  6262788 aaacaacttatggacatatcataagttattttcataagctctcccaaa 6262835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 26185550 - 26185601
Alignment:
Q  34 aaataagttggaaacaacttatggacatgtcataagttatttccataaactc 85  Q
    ||||| |||| |||||||||||| |||||||||||||| |||| ||||||||    
T  26185550 aaatatgttgaaaacaacttatgcacatgtcataagttgtttcaataaactc 26185601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 95
Target Start/End: Complemental strand, 32515470 - 32515411
Alignment:
Q  36 ataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    |||||||| ||||||||||| ||||||||||| | | ||||||||| ||| |||||||||    
T  32515470 ataagttgaaaacaacttattgacatgtcatacgctgtttccataagctctcccaaacag 32515411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 11695880 - 11695934
Alignment:
Q  15 ctattctggagtgcttatgaaa-taagttggaaacaacttatggacatgtcataa 68  Q
    ||||||||||  |||||||||| ||||||| ||||| ||||||||||||||||||    
T  11695880 ctattctggaaagcttatgaaaataagttgaaaacagcttatggacatgtcataa 11695934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 85
Target Start/End: Complemental strand, 19412611 - 19412577
Alignment:
Q  51 cttatggacatgtcataagttatttccataaactc 85  Q
    ||||||||||||||||||||| |||||||||||||    
T  19412611 cttatggacatgtcataagttgtttccataaactc 19412577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Complemental strand, 38867851 - 38867801
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    |||||||| |||||||| ||||||||||||||||||| ||| | |||||||    
T  38867851 aaacaactgatggacatatcataagttatttccataagctctctcaaacag 38867801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 47917274 - 47917312
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagtt 71  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  47917274 gaaataagttgaaaacaacttatgaacatgtcataagtt 47917312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 3223699 - 3223748
Alignment:
Q  27 gcttatgaaataagttggaaacaacttatggacatgtcataagttatttc 76  Q
    |||||||||||||| || |||||||||||  |||||||||||||| ||||    
T  3223699 gcttatgaaataagctgaaaacaacttataaacatgtcataagttgtttc 3223748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 11211156 - 11211205
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaa 82  Q
    ||||||||||  ||||||||||||||||||  ||||||||||| ||||||    
T  11211156 gaaataagttaaaaacaacttatggacatgctataagttattttcataaa 11211205  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 86
Target Start/End: Original strand, 17628649 - 17628690
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataaactcc 86  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||    
T  17628649 aaacagcttatggacatgtcataagttgtttccataagctcc 17628690  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 30418203 - 30418166
Alignment:
Q  44 gaaacaacttatggacatgtcataagttatttccataa 81  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  30418203 gaaataacttatggacatgtcataagttgtttccataa 30418166  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 35017600 - 35017649
Alignment:
Q  20 ctggagtgcttatg-aaataagttggaaacaacttatggacatgtcataa 68  Q
    |||||| ||||||| |||||||||| ||| ||||||||||||||||||||    
T  35017600 ctggagagcttatggaaataagttgaaaataacttatggacatgtcataa 35017649  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 3224434 - 3224498
Alignment:
Q  7 tttataacctattctggagtgcttatgaaa-taagttggaaacaacttatggacatgtcataagt 70  Q
    ||||||| ||||||| |||  ||||||||| |||| ||  |||||||||||||||||||||||||    
T  3224434 tttataagctattctagagaacttatgaaaataagctgagaacaacttatggacatgtcataagt 3224498  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 12477319 - 12477283
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataag 69  Q
    |||||||| || |||||||||||||||||||||||||    
T  12477319 gaaataagctgaaaacaacttatggacatgtcataag 12477283  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Original strand, 17420241 - 17420289
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||||||||| |||||| |||||||||||| ||||||| ||| |||||    
T  17420241 gaaataagttgaaaacaatttatggacatgtaataagttgttttcataa 17420289  T

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Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 58
Target Start/End: Original strand, 26916212 - 26916264
Alignment:
Q  7 tttataacctattctggagtgcttatg-aaataagttggaaacaacttatgga 58  Q
    |||||||  |||||||||| ||||||| ||||||| |||||||||||||||||    
T  26916212 tttataagttattctggagagcttatggaaataagctggaaacaacttatgga 26916264  T

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Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 30371185 - 30371229
Alignment:
Q  32 tgaaataagttggaaacaacttatggacatgtcataagttatttc 76  Q
    ||||||||| || |||||||||||||||||||||| |||| ||||    
T  30371185 tgaaataagctgaaaacaacttatggacatgtcattagttgtttc 30371229  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 33722433 - 33722381
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactc 85  Q
    |||||||| || ||||||||||| || |||||||| |||||||| ||||||||    
T  33722433 gaaataagctgaaaacaacttatagatatgtcatatgttatttctataaactc 33722381  T

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Target: scaffold0024 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 33 - 95
Target Start/End: Original strand, 27614 - 27676
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataaactcccccaaacag 95  Q
    |||||||| || ||||||||||| | ||||||||||| ||||||||||| ||| |||||||||    
T  27614 gaaataagctgaaaacaacttatagccatgtcataagctatttccataagctctcccaaacag 27676  T

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Target: scaffold0147 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 12724 - 12688
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataa 81  Q
    ||||||||||||||||||||||||||| |||||||||    
T  12724 aaacaacttatggacatgtcataagttgtttccataa 12688  T

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Target: scaffold0044 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 81
Target Start/End: Complemental strand, 51972 - 51936
Alignment:
Q  45 aaacaacttatggacatgtcataagttatttccataa 81  Q
    |||||||||||||||||||||||| ||||||||||||    
T  51972 aaacaacttatggacatgtcataaattatttccataa 51936  T

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Target: scaffold0311 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 10649 - 10601
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataagttatttccataa 81  Q
    |||||||| || |||||||||||||||||||||| |||| ||| |||||    
T  10649 gaaataagctgaaaacaacttatggacatgtcattagttgtttacataa 10601  T

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Target: scaffold0286 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 16148 - 16184
Alignment:
Q  33 gaaataagttggaaacaacttatggacatgtcataag 69  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  16148 gaaataagttgaaaacaacttatggacatgtcgtaag 16184  T

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