View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1273-Insertion-1 (Length: 283)
Name: NF1273-Insertion-1
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273-Insertion-1 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 283
Target Start/End: Complemental strand, 29285469 - 29285195
Alignment:
| Q |
7 |
actactagactaccactccacttccatctccttcaattctgttccaattttcaatttaattttgaaaagcatttagttacaagtactcatccaacaaact |
106 |
Q |
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| T |
29285469 |
actactagactaccactccacttccatctccttcaattctgttccaattttcaatttaattttgaaaagcatt--gttacaagtactcatccaacaaact |
29285372 |
T |
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| Q |
107 |
tggacagaatagctaacgaccaaccataaaataagtgtctgtatattgaaatgttgtgagggaaaacggaaacaccaaaaaacttatgaatagtgctgca |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29285371 |
tggacagaatagctaacgaccaaccataaaataagtgtctgtatattgaaatgttgtgagggaaaacggaaacaccaaaaaacttatgaatagtgctgca |
29285272 |
T |
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| Q |
207 |
ttatgtaagttcaacatctccaatgacaggaatattttcaaattacccccttgtaaaaactaaaaactccatcgcca |
283 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29285271 |
ttatataagttcaacatctccaatgacaggaatattttcaaattacccccttgtaaaaactaaaaactccatcgcca |
29285195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 283
Target Start/End: Complemental strand, 35233376 - 35233100
Alignment:
| Q |
7 |
actactagactaccactccacttccatctccttcaattctgttccaattttcaatttaattttgaaaagcatttagttacaagtactcatccaacaaact |
106 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||| |
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| T |
35233376 |
actactagactaccgctccacttccatctccttcaattctgttccatttttcaatttaattttggaaagcattcagttacaattactcatccaacaaact |
35233277 |
T |
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| Q |
107 |
tggacagaatagctaacgaccaaccataaaataagtgtctgtatattgaaatgttgtgagggaaaacggaaacaccaaaaaacttatgaatagtgctgca |
206 |
Q |
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|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||| ||| ||||||| | |||||| |
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| T |
35233276 |
tggacagaatagctaatgaccaaccataaaataagtgtctttatattgaaatgttgtgaaggaaaacggaagcaccaacaaatttatgaaacgcgctgca |
35233177 |
T |
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| Q |
207 |
ttatgtaagttcaacatctccaatgacaggaatattttcaaattacccccttgtaaaaactaaaaactccatcgcca |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||| |
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| T |
35233176 |
ttatgtaagttcaacatctccaatgacaggaatattttcaaattacccccttgtaaaaacaaaaaatttcatcgcca |
35233100 |
T |
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