View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1273-Insertion-12 (Length: 495)

Name: NF1273-Insertion-12
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1273-Insertion-12
NF1273-Insertion-12
[»] chr7 (14 HSPs)
chr7 (181-495)||(23789913-23790234)
chr7 (239-416)||(23820906-23821083)
chr7 (318-414)||(23796682-23796778)
chr7 (236-398)||(23815453-23815615)
chr7 (273-398)||(23800857-23800982)
chr7 (243-399)||(23827135-23827291)
chr7 (163-232)||(23800723-23800792)
chr7 (436-492)||(23815668-23815724)
chr7 (416-471)||(23827323-23827378)
chr7 (13-127)||(23789678-23789791)
chr7 (168-242)||(23805489-23805563)
chr7 (316-398)||(23805662-23805744)
chr7 (431-492)||(23805792-23805853)
chr7 (416-492)||(23821098-23821174)


Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 181 - 495
Target Start/End: Original strand, 23789913 - 23790234
Alignment:
Q  181 acacgaaaattcaaacataaattaaaatgacatacaaatagtttagacatttcttcttaaat-------taatctattttgaagcagcaagactttctaa 273  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||       |||||||||||||||||||||||||||||||    
T  23789913 acacgaaaatttaaacataaactaaaatgacatacaaatagtttagatatttcttcttaaatccccatttaatctattttgaagcagcaagactttctaa 23790012  T
Q  274 acgagctttgtagaaagccaaataagtttctttgggagggagtttttccttgacaattgggtggttattgaagttttggctccaattgaatagtttggga 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23790013 acgagctttgtagaaagccaaataagtttctttgggagggagtttttccttgacaattgggtggttattgaagttttggctccaattgaatagtttggga 23790112  T
Q  374 aatttctcactagtgaacaacttcaatcccattagttcttgtaaagctatgaaagctgcagtaatgtcaacaatgccaatctcatctccaccaaagaatt 473  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23790113 aatttctcactagtgaacaacttcaatcccattacttcttgtaaagctatgaaggctgcagtaatgtcaacaatgccaatctcatctccaccaaagaatt 23790212  T
Q  474 ttcctttgagctcattctctag 495  Q
    |  | |||||||||||||||||    
T  23790213 tgtccttgagctcattctctag 23790234  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 239 - 416
Target Start/End: Original strand, 23820906 - 23821083
Alignment:
Q  239 aaattaatctattttgaagcagcaagactttctaaacgagctttgtagaaagccaaataagtttctttgggagggagtttttccttgacaattgggtggt 338  Q
    ||||||||||||||||||||| ||||||||||  ||||||||||| |||| ||||||     |||| |  |||| |  ||||||||||||||||||||||    
T  23820906 aaattaatctattttgaagcaacaagactttcataacgagctttgaagaaggccaaaagtccttctctacgaggcaagttttccttgacaattgggtggt 23821005  T
Q  339 tattgaagttttggctccaattgaatagtttgggaaatttctcactagtgaacaacttcaatcccattagttcttgta 416  Q
    | ||||||| ||| ||||||||| | || || |||||||||||||| |||||||||||||||||  ||| ||||||||    
T  23821006 tgttgaagtcttgactccaattgtaaagcttaggaaatttctcacttgtgaacaacttcaatcctgttacttcttgta 23821083  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 318 - 414
Target Start/End: Original strand, 23796682 - 23796778
Alignment:
Q  318 tttccttgacaattgggtggttattgaagttttggctccaattgaatagtttgggaaatttctcactagtgaacaacttcaatcccattagttcttg 414  Q
    ||||||||||||| |||||||||||||||| ||||||||||||| |||  || |||||||||||||||||||||||||| | ||| |||| ||||||    
T  23796682 tttccttgacaatagggtggttattgaagtcttggctccaattgtataactttggaaatttctcactagtgaacaacttgagtcctattacttcttg 23796778  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 236 - 398
Target Start/End: Original strand, 23815453 - 23815615
Alignment:
Q  236 cttaaattaatctattttgaagcagcaagactttctaaacgagctttgtagaaagccaaataagtttctttgggagggagtttttccttgacaattgggt 335  Q
    |||||||| |||||||||||| ||  | |||||||  |||||||||||||||| ||||||   || ||| | ||||| ||||||||||||||||||||||    
T  23815453 cttaaattgatctattttgaaccaaaatgactttcataacgagctttgtagaaggccaaaagggtctctctaggaggcagtttttccttgacaattgggt 23815552  T
Q  336 ggttattgaagttttggctccaattgaatagtttgggaaatttctcactagtgaacaacttca 398  Q
    | || ||||| | ||||||||||||| | || || |||||||  ||||| |||||||| ||||    
T  23815553 gattgttgaattcttggctccaattgtaaagctttggaaattcttcacttgtgaacaatttca 23815615  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 273 - 398
Target Start/End: Original strand, 23800857 - 23800982
Alignment:
Q  273 aacgagctttgtagaaagccaaataagtttctttgggagggagtttttccttgacaattgggtggttattgaagttttggctccaattgaatagtttggg 372  Q
    ||||| |||||||||||||||||   || ||| | ||||| | ||||||||| ||||||||||| || ||||| | ||||||||||||| | || || ||    
T  23800857 aacgacctttgtagaaagccaaaagggtctctctaggaggcaatttttccttaacaattgggtgattgttgaattcttggctccaattgtaaagctttgg 23800956  T
Q  373 aaatttctcactagtgaacaacttca 398  Q
    ||||| |||| |||||||||| ||||    
T  23800957 aaattcctcaatagtgaacaatttca 23800982  T

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Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 243 - 399
Target Start/End: Original strand, 23827135 - 23827291
Alignment:
Q  243 taatctattttgaagcagcaagactttctaaacgagctttgtagaaagccaaataagtttctttgggagggagtttttccttgacaattgggtggttatt 342  Q
    |||||||||||||||||  |||||||||  ||||||||||  || ||| ||||     |||| | ||||| | ||| ||||| |||||||| |||||  |    
T  23827135 taatctattttgaagcaagaagactttcataacgagctttaaagtaagtcaaaagtccttctctaggaggcaatttatccttaacaattggatggttggt 23827234  T
Q  343 gaagttttggctccaattgaatagtttgggaaatttctcactagtgaacaacttcaa 399  Q
    ||||| ||| ||||| ||| | || |||||||||||||||||||||||||| |||||    
T  23827235 gaagtcttgactccatttgtaaagcttgggaaatttctcactagtgaacaaattcaa 23827291  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 163 - 232
Target Start/End: Original strand, 23800723 - 23800792
Alignment:
Q  163 ttgcatatatctattatgacacgaaaattcaaacataaattaaaatgacatacaaatagtttagacattt 232  Q
    ||||||||||||| |||||||  |||||| ||||| ||| |||||||||| |||| ||||||||||||||    
T  23800723 ttgcatatatctagtatgacatcaaaatttaaacagaaactaaaatgacaaacaagtagtttagacattt 23800792  T

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Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 436 - 492
Target Start/End: Original strand, 23815668 - 23815724
Alignment:
Q  436 aatgtcaacaatgccaatctcatctccaccaaagaattttcctttgagctcattctc 492  Q
    ||||||||||| ||||||||| || ||||||||||||||  ||||||||||||||||    
T  23815668 aatgtcaacaaagccaatctcctccccaccaaagaatttgtctttgagctcattctc 23815724  T

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Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 471
Target Start/End: Original strand, 23827323 - 23827378
Alignment:
Q  416 aaagctatgaaagctgcagtaatgtcaacaatgccaatctcatctccaccaaagaa 471  Q
    |||||||||||| |||||| ||| |||||||| |||||||| ||||||||||||||    
T  23827323 aaagctatgaaaactgcagcaatatcaacaattccaatctcttctccaccaaagaa 23827378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 23789678 - 23789791
Alignment:
Q  13 acatatatat--actaagttgatttcgttataaagtgacgtgttaggttgctatttaattttaattagaaaaaagattttctttattaactaaaatagca 110  Q
    ||||||||||  |||| |||||||||||||||||| |||||| || | |||||||||| ||||||  ||| ||||||||| | || ||||  |||||| |    
T  23789678 acatatatatgaactaggttgatttcgttataaagagacgtgctaaggtgctatttaa-tttaatgggaataaagattttttgtactaac--aaatagta 23789774  T
Q  111 tatacaaggtcaaaatc 127  Q
    || ||||||||||||||    
T  23789775 taaacaaggtcaaaatc 23789791  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 23805489 - 23805563
Alignment:
Q  168 tatatctattatgacacgaaaattcaaacataaattaaaatgacatacaaatagtttagacatttcttcttaaat 242  Q
    |||||||| |||||||  |||||||||||| ||| |||||||||| |||| |||||| ||||||| | |||||||    
T  23805489 tatatctagtatgacatcaaaattcaaacagaaactaaaatgacaaacaagtagttttgacatttttccttaaat 23805563  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 398
Target Start/End: Original strand, 23805662 - 23805744
Alignment:
Q  316 tttttccttgacaattgggtggttattgaagttttggctccaattgaatagtttgggaaatttctcactagtgaacaacttca 398  Q
    |||||| || |||||||| ||||| ||||| | ||||||||||||  | || |||||||||| ||||||||||||||| ||||    
T  23805662 tttttcattaacaattggatggttgttgaattcttggctccaattataaagcttgggaaattcctcactagtgaacaatttca 23805744  T

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Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 431 - 492
Target Start/End: Original strand, 23805792 - 23805853
Alignment:
Q  431 gcagtaatgtcaacaatgccaatctcatctccaccaaagaattttcctttgagctcattctc 492  Q
    |||| |||||||||||  ||||| || |||||||||||||||||  ||||||||||||||||    
T  23805792 gcagcaatgtcaacaaaaccaatatcctctccaccaaagaatttgtctttgagctcattctc 23805853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 416 - 492
Target Start/End: Original strand, 23821098 - 23821174
Alignment:
Q  416 aaagctatgaaagctgcagtaatgtcaacaatgccaatctcatctccaccaaagaattttcctttgagctcattctc 492  Q
    |||||||||||  | ||||||||||||| ||  ||||| ||||||||||||||||| ||  | ||||||||||||||    
T  23821098 aaagctatgaagaccgcagtaatgtcaataagtccaatatcatctccaccaaagaacttgtccttgagctcattctc 23821174  T

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