View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1273-Insertion-6 (Length: 359)
Name: NF1273-Insertion-6
Description: NF1273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1273-Insertion-6 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 359
Target Start/End: Complemental strand, 3734370 - 3734011
Alignment:
| Q |
8 |
tatatcatatatatgtatatgtgtgattgcaggaattattataggtgttcagtggaggggtgtcctgtnnnnnnnngagttgagagagataataatgatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
3734370 |
tatatcatatatatgtatatgtgtgattgcaggaattattataggtgttcagtggaggggtgtcctgtaaaaaaaagagttgagagagataataatgatt |
3734271 |
T |
|
| Q |
108 |
cgagttatgtgataacaacttatgaaggcatgcacacccatccaaattcttgctagctcaaacataatatgaagaagttcttt-------------acta |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3734270 |
cgagttatgtgataacaacttatgaaggcatgcacacccatccaaattcttgctagctcaaacataatatgaagaagttctttgctgcatgctcttacta |
3734171 |
T |
|
| Q |
195 |
atgttactagtattcctacatgaaaatattcaaattcccaacaagtttgagtttgcaattgctcatgtacaatttaccttaaaaagggttttgaactttg |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3734170 |
atgttactagtattcctacatgaaaatattcaaattcccaacaagtttgagtttgcaattgctcatgtacaatttactttaaaaagggttttgaactttg |
3734071 |
T |
|
| Q |
295 |
aagaatatatatacaaagcttagtcagcaaataactatacattactattcatctagattcggtta |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3734070 |
aagaatatatatacaaagcttagtcagcaaataacta-----tactattcatctagattcggtta |
3734011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University