View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12730_low_1 (Length: 460)
Name: NF12730_low_1
Description: NF12730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12730_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 246 - 447
Target Start/End: Complemental strand, 1852876 - 1852675
Alignment:
| Q |
246 |
tcatacctaaggggaaactattgtcatactcatattcatcattagtagtagtagtactagtaatgcaatcatcttgattgagttgtatctctctaattgc |
345 |
Q |
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| T |
1852876 |
tcatacctaaggggaaactattgtcatactcatattcatcattagtagtagtagtactagtaatgcaatcatcttgattgagttgtatctctctaattgc |
1852777 |
T |
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| Q |
346 |
ttgatttcctctatcaaccaccaaaagagagcaactacttctagcataaattaaatcaaaatcatttgaaaactttgcatcctcacttggaccatcaaca |
445 |
Q |
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| T |
1852776 |
ttgatttcctctatcatccaccaaaagagagcaactacttctagcataaattaaatcaaaatcatttgaaaactttgcatcctcacttggaccatcaaca |
1852677 |
T |
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| Q |
446 |
tg |
447 |
Q |
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|| |
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| T |
1852676 |
tg |
1852675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 1853121 - 1852940
Alignment:
| Q |
1 |
aaaatccgtcaccctgaggggtcattgtatagaagataataacttacatctgaagatgaaaacatatctgtcaccctcctcttaagtaatgctaacatat |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1853121 |
aaaatctgtcaccctgaggggtcattgtatagaagataataacttacatctgaagatgaaaacatatccgtcaccctcctcttaagtaatgctaacatat |
1853022 |
T |
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| Q |
101 |
aaccaaaaaatccagcagcaacaagagcagctattcctgtaatgttattatttgcacacaaattttagattagcatgctcct |
182 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1853021 |
aaccaaaaaatccagcagaaacaagagcagctattcctgtaatgttattatttgcacacaaattttagattagcatgctcct |
1852940 |
T |
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