View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12730_low_11 (Length: 213)
Name: NF12730_low_11
Description: NF12730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12730_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 6504997 - 6505180
Alignment:
| Q |
15 |
tggagcaaaccaaagtccactatctcttttgttattccacacaactcccactatcctattctcttttgtaaactcttcttcatacaatttcccattcttc |
114 |
Q |
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| T |
6504997 |
tggagcaaaccaaagtccactatctcttttattattccacaaaactcccactattctattctcttttgtaaactcttcttcatacaatttcccattcttc |
6505096 |
T |
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| Q |
115 |
ttaacatgccaccacattttggttccaagaatttccaatgatgttagggttgatccaatggacacaagttgagaatcactatat |
198 |
Q |
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| T |
6505097 |
ttaacatgccaccacattttggttccaagaatttccaatgatgttagtgttgatccaatggacacaagttgagaatcaccatat |
6505180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 6516723 - 6516585
Alignment:
| Q |
60 |
tcccactatcctattctcttttgtaaactcttcttcatacaatttcccattcttcttaacatgccaccacattttggttccaagaatttccaatgatgtt |
159 |
Q |
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| T |
6516723 |
tcccactatcctattctcttttgtaaactcttcatcatacaatttcccattctttttaacatgccaccacattttggttccaagaatttccaatgatgtt |
6516624 |
T |
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| Q |
160 |
agggttgatccaatggacacaagttgagaatcactatat |
198 |
Q |
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| T |
6516623 |
agtgttgatgcaattgacacaagttgaggatcaccatat |
6516585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 6527711 - 6527893
Alignment:
| Q |
16 |
ggagcaaaccaaagtccactatctcttttgttattccacacaactcccactatcctattctcttttgtaaactcttcttcatacaatttcccattcttct |
115 |
Q |
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| T |
6527711 |
ggagcaaacgacaatccactgtctctcttgttagaccataaaactcccatgatcctattctcctttgtaaaatctttttcatagagcttaccgtcctttt |
6527810 |
T |
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| Q |
116 |
taacatgccaccacattttggttccaagaatttccaatgatgttagggttgatccaatggacacaagttgagaatcactatat |
198 |
Q |
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| T |
6527811 |
taacatgccaccacattttctctgcacaaatttccaatgatgcaagtgttgatccaatggacacaagttgaggatcaccatat |
6527893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 6462482 - 6462399
Alignment:
| Q |
15 |
tggagcaaaccaaagtccactatctcttttgttattccacacaactcccactatcctattctcttttgtaaactcttcttcata |
98 |
Q |
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| T |
6462482 |
tggagcaaaccaaagtccactttctctcttgttagaccatagaaatcccatgatcctgttctcttttgtaaactcttctgcata |
6462399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 6473703 - 6473561
Alignment:
| Q |
16 |
ggagcaaaccaaagtccactatctcttttgttattccacacaactcccactatcctattctcttttgtaaactcttcttcatacaatttcccattcttc- |
114 |
Q |
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| T |
6473703 |
ggagcaaaccataatccactgtctctcttgttagaccatagaactcccatcatcctattctcttttgtaaaatcttcctcatagagattctc-tccttct |
6473605 |
T |
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| Q |
115 |
ttaacatgccaccacattttggttccaagaatttccaatgatgt |
158 |
Q |
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| T |
6473604 |
tttacatgccaccacattttagcagcaagaatttccaatgatgt |
6473561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 35244657 - 35244486
Alignment:
| Q |
15 |
tggagcaaaccaaagtccactatctcttttgttattccacacaactcccactatcctattctcttttgtaaactcttcttcatacaatttcccattcttc |
114 |
Q |
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|||||||||| | || |||||||| || || ||| ||||| |||||||| |||||||||||||||||||| |||| |||||||| || ||| |||| |
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| T |
35244657 |
tggagcaaacaagagaccactatccctcttattagaccacaaaactcccatgatcctattctcttttgtaaaatctttttcatacatatttccactcttt |
35244558 |
T |
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| Q |
115 |
ttaacatgccaccacattttggttccaagaatttccaatgatgttagggttgatccaatggacacaagttga |
186 |
Q |
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| T |
35244557 |
ttaacatgccaccacaatttagcagcacaaatttccaatgatgcaagtgttgatccaatggacacaatttga |
35244486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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