View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12730_low_2 (Length: 357)
Name: NF12730_low_2
Description: NF12730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12730_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 17 - 340
Target Start/End: Complemental strand, 10981210 - 10980878
Alignment:
| Q |
17 |
cactttaaacttgtaggtggaaggaccaaggtttgatcccccactgacattacacattttcggggagggacggtgtgctttaagtgtgactaaaattcta |
116 |
Q |
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| T |
10981210 |
cactttaaacttgtaggtggaaggaccaaggtttgataccccactgacattacacattttcggggagggacggtgtgctttaagtgtgactaaaattcta |
10981111 |
T |
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| Q |
117 |
tttggatagataacttaattaagtgcttatgatgctcatgtataagttatttttat---------nnnnnnnnnnnttaaataaatcaaactacttctta |
207 |
Q |
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| T |
10981110 |
tttggatagataacttaattaagtgcttatgatgctcatgtataagttatttttataaaaaaaaaaaaaaaaaaaattaaataaatcaaactacttctta |
10981011 |
T |
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| Q |
208 |
aagctgtaagttattttcataaactatactatagctcacgaaaataagctaaaaacaggttatgtacgacagtacgtgtcatatgctggttttgtaagct |
307 |
Q |
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| T |
10981010 |
aagctataagttattttcataaactatactatagctcacgaaaagaagctaaaaacaggttatgtacgacaatacgtgtcatatgctgcttttgtaagct |
10980911 |
T |
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| Q |
308 |
ctctctcaaacaatctcataaatgcacatggca |
340 |
Q |
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| T |
10980910 |
ctctctcaaacaatctcataaatgcacatggca |
10980878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 13630472 - 13630439
Alignment:
| Q |
113 |
tctatttggatagataacttaattaagtgcttat |
146 |
Q |
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| T |
13630472 |
tctatttagatagataacttaattaagtgcttat |
13630439 |
T |
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