View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12730_low_3 (Length: 302)
Name: NF12730_low_3
Description: NF12730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12730_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 1529896 - 1529718
Alignment:
| Q |
1 |
atcaatattagaagatttcatataaccaaataattagaaggttgcaattttaaaattaatttagggattcttgatgttgtaa-----------tgaaaga |
89 |
Q |
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| T |
1529896 |
atcaatattagaagatttcatataaccaaataattagaaggttgcaattttaaaattaatttagggattcttgatgttgtaacagcaaagtaatgaaaga |
1529797 |
T |
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| Q |
90 |
atagactcacctttgaagcaaagagcaaggacgacggagaaacgattgtcgacgcaacacatgttgtctcagacgaagc |
168 |
Q |
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| T |
1529796 |
atagactcacctttgaagcaaagagcaaggacgacggagaaacgattgtcggcgcaacacatgttgtctcagacgaagc |
1529718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 224 - 283
Target Start/End: Complemental strand, 1529663 - 1529604
Alignment:
| Q |
224 |
gttatgccgaacatggccgtcccggcgaggttttatctgtacatttttagatggcgaaac |
283 |
Q |
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| T |
1529663 |
gttatgccgaacatggccgtcccggcgaggttttatctgtacatttttagatggcgaaac |
1529604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 109; Significance: 7e-55; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 26841671 - 26841487
Alignment:
| Q |
1 |
atcaatattagaagatttcatataaccaaataattagaaggttgcaattttaaaattaatttagggattcttgatgtt-----------------gtaat |
83 |
Q |
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| T |
26841671 |
atcaatattagaagatttcatataacccaataattagaaggttgcaattttaaaattaatttagggattcttgatgttgtaacaggcacaacaaagtaac |
26841572 |
T |
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| Q |
84 |
gaaagaatagactcacctttgaagcaaagagcaaggacgacggagaaacgattgtcgacgcaacacatgttgtctcagacgaagc |
168 |
Q |
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| T |
26841571 |
gaaagaatagactcgcctttgaagcaaagagcaaggacgacggagaaacgattgtcggcgcaacacatgttgtctccgacgaagc |
26841487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 22476822 - 22476949
Alignment:
| Q |
1 |
atcaatattagaagatttcatataaccaaataattagaaggttgcaattttaaaattaatttagggattcttgatgtt-----------gtaatgaaaga |
89 |
Q |
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| T |
22476822 |
atcaatattagaagatttcatataaccaaataattagaaggctgcaattttaaaattaatttagggatttctcatgttgtaacaacaaagtaatgaaaga |
22476921 |
T |
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| Q |
90 |
atagactcacctttgaagcaaagagcaa |
117 |
Q |
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| T |
22476922 |
atagactcacctttgaagcaaagagcaa |
22476949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 229 - 283
Target Start/End: Complemental strand, 26841426 - 26841372
Alignment:
| Q |
229 |
gccgaacatggccgtcccggcgaggttttatctgtacatttttagatggcgaaac |
283 |
Q |
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| T |
26841426 |
gccgaacatggctgttccggcgaggttttatctgtacatttttagatggcgaaac |
26841372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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