View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12730_low_4 (Length: 296)
Name: NF12730_low_4
Description: NF12730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12730_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 1926601 - 1926343
Alignment:
| Q |
19 |
cttcatttttcttgattacatttccacacaaaaacactaaccacttgttgtaacttgtaaaccactaaagtatacatctaaatctaaaaataatatacca |
118 |
Q |
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| T |
1926601 |
cttcatttttcttgattacatttc--------aacactaaccacttgttgtaacttgtaaaccactaaagtatacatctaaatctaaacataatatacca |
1926510 |
T |
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| Q |
119 |
ccacattttaacacatgcgcagggtgtgtgagtgttgtaaattatagatagtcttcaatggaaatgttcaaatcctcttgttgttgactgcaagaaactc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1926509 |
ccacattttaacacatgcgcagggtgtgtgagtgttgtaaattatagatagtcttcaatggaaatgttcaaatcctcttgttgttgactgcaagaaactc |
1926410 |
T |
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| Q |
219 |
cttgatcatcacccaaaccatcccaccaaaaaacatcatcaggaacaacattatccatatgattcat |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1926409 |
cttgatcatcacccaaaccatcccaccaaaaaacatcatcaggaacaacattatccatatgattcat |
1926343 |
T |
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