View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12730_low_5 (Length: 269)
Name: NF12730_low_5
Description: NF12730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12730_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 15194852 - 15195093
Alignment:
| Q |
17 |
cataaaagctctttatcgggtctagagatgtgttcatgtcggtaaacatgccctctaattttgcagtaaattggtatccacattctgtcttcatcttagc |
116 |
Q |
| |
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||||||||||||| ||||||| ||||||||| |||||||| || |||||||||||||||||||||||||||| |||||||||||||||||| | |||||| |
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| T |
15194852 |
cataaaagctcttcatcgggtgtagagatgttttcatgtctgttaacatgccctctaattttgcagtaaattcgtatccacattctgtcttgagcttagc |
15194951 |
T |
|
| Q |
117 |
tatgagactcctctcggcatcatcagaaactgtttttccacacaaaagccgctttgcaaggtgctgtttgtaatacttctcaaacacatctttttcctgc |
216 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15194952 |
tatgagactccgctcggcatcatcagaaactgtttttccagacaaaagccgctttgcaaggtgctttttgtaatacttctcaaacacatctttttcctgc |
15195051 |
T |
|
| Q |
217 |
aaataacggaataaaaccataaccttgttaagagtaatctct |
258 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15195052 |
aaataacggaataaaaacataaccttgttaagagtaatctct |
15195093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 15215270 - 15215511
Alignment:
| Q |
17 |
cataaaagctctttatcgggtctagagatgtgttcatgtcggtaaacatgccctctaattttgcagtaaattggtatccacattctgtcttcatcttagc |
116 |
Q |
| |
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||||||||||||| ||||||| ||||||||| |||||||| || |||||||||||||||||||||||||||| |||||||||||||||||| | |||||| |
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| T |
15215270 |
cataaaagctcttcatcgggtgtagagatgttttcatgtctgttaacatgccctctaattttgcagtaaattcgtatccacattctgtcttgagcttagc |
15215369 |
T |
|
| Q |
117 |
tatgagactcctctcggcatcatcagaaactgtttttccacacaaaagccgctttgcaaggtgctgtttgtaatacttctcaaacacatctttttcctgc |
216 |
Q |
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||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15215370 |
tatgagactccgctcggcatcatcagaaactgtttttccagacaaaagccgctttgcaaggtgctttttgtaatacttctcaaacacatctttttcctgc |
15215469 |
T |
|
| Q |
217 |
aaataacggaataaaaccataaccttgttaagagtaatctct |
258 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15215470 |
aaataacggaataaaaacataaccttgttaagagtaatctct |
15215511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 21 - 258
Target Start/End: Complemental strand, 17564189 - 17563952
Alignment:
| Q |
21 |
aaagctctttatcgggtctagagatgtgttcatgtcggtaaacatgccctctaattttgcagtaaattggtatccacattctgtcttcatcttagctatg |
120 |
Q |
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||||||||| |||| ||||| |||||| |||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||| ||||| |
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| T |
17564189 |
aaagctcttcatcgtgtctacagatgttttcatgtctgtaaacatgccctctaattttgcggtaaattggaatccacattctgtcttcagcttaactatg |
17564090 |
T |
|
| Q |
121 |
agactcctctcggcatcatcagaaactgtttttccacacaaaagccgctttgcaaggtgctgtttgtaatacttctcaaacacatctttttcctgcaaat |
220 |
Q |
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|
||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
17564089 |
agactcctctcagcatcatcagaaactgtttttccagacaaaagccgctttgcaaggtgctgcttgtaatacttctcaaacacatctttttcctgcaaat |
17563990 |
T |
|
| Q |
221 |
aacggaataaaaccataaccttgttaagagtaatctct |
258 |
Q |
| |
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| ||||||| |||||||||||||| ||| |||||||| |
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| T |
17563989 |
accggaatagaaccataaccttgtcaaggataatctct |
17563952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 36 - 255
Target Start/End: Original strand, 17621438 - 17621656
Alignment:
| Q |
36 |
gtctagagatgtgttcatgtcggtaaacatgccctctaattttgcagtaaattggtatccacattctgtcttcatcttagctatgagactcctctcggca |
135 |
Q |
| |
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||||||||| || ||||| || |||||||||||||||||||||| ||||| |||||||||||||||||||| | |||| |||||||||||||| || |
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| T |
17621438 |
gtctagagaagttttcatatctgtaaacatgccctctaattttgaggtaaaatggtatccacattctgtcttgagcttaatgatgagactcctctcagcg |
17621537 |
T |
|
| Q |
136 |
tcatcagaaactgtttttccacacaaaagccgctttgcaaggtgctgtttgtaatacttctcaaacacatctttttcctgcaaataacggaataaaacca |
235 |
Q |
| |
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||||||||||||||||||||| |||||| |||| |||| || ||| ||||||||||||||||||||| || ||||| ||||| || |||||| | || |
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| T |
17621538 |
tcatcagaaactgtttttccagacaaaatccgcattgccagatgcagtttgtaatacttctcaaacaagtc-ttttcttgcaagtattggaatagcatca |
17621636 |
T |
|
| Q |
236 |
taaccttgttaagagtaatc |
255 |
Q |
| |
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| ||||||| |||||||||| |
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| T |
17621637 |
tcaccttgtcaagagtaatc |
17621656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 14764410 - 14764633
Alignment:
| Q |
21 |
aaagctctttatcgggtctagagatgtgttcatgtcggtaaacatgccctctaattttgcagtaaattggtatccacattctgtcttcatcttagctatg |
120 |
Q |
| |
|
||||||||| |||| ||||| |||||| |||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||| ||||| |
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| T |
14764410 |
aaagctcttcatcgtgtctacagatgttttcatgtctgtaaacatgccctctaattttgcggtaaattggaatccacattctgtcttcagcttaactatg |
14764509 |
T |
|
| Q |
121 |
agactcctctcggcatcatcagaaactgtttttccacacaaaagccgctttgcaaggtgctgtttgtaatacttctcaaacacatctttttcctgcaaat |
220 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14764510 |
agactcctctcagcatcatcagaaactgtttttccagacaaaagtcgctttgcaaggtgctgcttgtaatacttctcaaacacatctttttcctgcaaat |
14764609 |
T |
|
| Q |
221 |
aacggaataaaaccataaccttgt |
244 |
Q |
| |
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| ||||||| |||||||||||||| |
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| T |
14764610 |
accggaatagaaccataaccttgt |
14764633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 258
Target Start/End: Original strand, 14749357 - 14749598
Alignment:
| Q |
17 |
cataaaagctctttatcgggtctagagatgtgttcatgtcggtaaacatgccctctaattttgcagtaaattggtatccacattctgtcttcatcttagc |
116 |
Q |
| |
|
||||||||| ||| ||| ||||||||| | |||||||| ||| ||| ||||||||||||| |||||||||||||||||||||| |||| | |||| |
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| T |
14749357 |
cataaaagcccttcgtcgtgtctagagaagctttcatgtctttaagcattccctctaattttgaagtaaattggtatccacattctttcttgagcttaat |
14749456 |
T |
|
| Q |
117 |
tatgagactcctctcggcatcatcagaaactgtttttccacacaaaagccgctttgcaaggtgctgtttgtaatacttctcaaacacatctttttcctgc |
216 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||| || |||||| ||||||||||||||||||| |||||||| ||| |
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| T |
14749457 |
tatgagactcctctcggcatcttcagaaactgtctttccagccaaaagccgctttgccagatgctgtgtgtaatacttctcaaacacgtctttttcttgc |
14749556 |
T |
|
| Q |
217 |
aaataacggaataaaaccataaccttgttaagagtaatctct |
258 |
Q |
| |
|
| || |||||||| | ||| ||||| | |||||||| |||| |
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| T |
14749557 |
aggtatcggaataacatcatcaccttttcaagagtaacctct |
14749598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 49 - 227
Target Start/End: Original strand, 24394858 - 24395036
Alignment:
| Q |
49 |
ttcatgtcggtaaacatgccctctaattttgcagtaaattggtatccacattctgtcttcatcttagctatgagactcctctcggcatcatcagaaactg |
148 |
Q |
| |
|
|||||||| |||||||| ||||||||||||| |||||||| || |||||||| ||||| | |||| | |||||||| || || |||||||||||||| | |
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| T |
24394858 |
ttcatgtctgtaaacattccctctaattttgatgtaaattgatagccacattcagtcttgagcttaacaatgagacttctttcagcatcatcagaaaccg |
24394957 |
T |
|
| Q |
149 |
tttttccacacaaaagccgctttgcaaggtgctgtttgtaatacttctcaaacacatctttttcctgcaaataacggaa |
227 |
Q |
| |
|
|||||||| ||||||||| |||||| || |||||||| |||||||||||||| ||||||||||| ||||| || ||||| |
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|
| T |
24394958 |
tttttccagacaaaagcctctttgccagatgctgtttataatacttctcaaaaacatctttttcttgcaagtatcggaa |
24395036 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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