View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12730_low_9 (Length: 223)
Name: NF12730_low_9
Description: NF12730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12730_low_9 |
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| [»] scaffold0927 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 2e-82; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 14 - 203
Target Start/End: Original strand, 28584542 - 28584732
Alignment:
| Q |
14 |
ttcactggaaatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattcatccatgataattctta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28584542 |
ttcactggaaatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattcatccatgataattctta |
28584641 |
T |
|
| Q |
114 |
tcattagaactttacttttaacaattgagttaattggttgaacaatttaatcaaatatttgtttaatattctatctta-gagacatatttc |
203 |
Q |
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||||||||||||||| ||||||||| ||||||| |||||||||||||||||| |||| ||||||||||||||| ||| |||||||||||| |
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| T |
28584642 |
tcattagaactttacatttaacaatcgagttaagtggttgaacaatttaatcgaatacttgtttaatattctaatttaggagacatatttc |
28584732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 28566567 - 28566759
Alignment:
| Q |
14 |
ttcactggaaatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattcatccatgataattctta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28566567 |
ttcactggaaatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattcatccatgataactctta |
28566666 |
T |
|
| Q |
114 |
tcattagaactttacttttaacaattgagttaattggttgaacaatttaatcaaatatttgtttaatattctatctta-gagacatatttctt |
205 |
Q |
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||||||||||||||| ||||||||| ||||||| |||||||||||||||||| |||| ||||||||||||||| ||| |||||||||||||| |
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| T |
28566667 |
tcattagaactttacatttaacaatcgagttaagtggttgaacaatttaatcgaatacttgtttaatattctaatttaggagacatatttctt |
28566759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 14 - 182
Target Start/End: Original strand, 28573312 - 28573484
Alignment:
| Q |
14 |
ttcactggaaatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattcatccatg----ataatt |
109 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||| |
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| T |
28573312 |
ttcaccggaaatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgctctccactctgcattcattcatggataataatt |
28573411 |
T |
|
| Q |
110 |
cttatcattagaactttacttttaacaattgagttaattggttgaacaatttaatcaaatatttgtttaatat |
182 |
Q |
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||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28573412 |
cttatcattagaactttacattttacaattgcgttaattggttgaacaatttaatcaaatatttgtttaatat |
28573484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 26314459 - 26314647
Alignment:
| Q |
14 |
ttcactggaaatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattcatccatgataattctta |
113 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||| ||| |||||| |
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| T |
26314459 |
ttcaccggaaatatcttggtgttcactcatgtagcaatcaagatatgaaccatcaagaccattttgatctccactctgcaatcat----gatggttctta |
26314554 |
T |
|
| Q |
114 |
tcattagaactttacttttaacaattgagttaattggttgaacaatttaatcaaatatttgtttaatattctatctta-gagacatatttctt |
205 |
Q |
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| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| |||||||||||||| |
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| T |
26314555 |
taattagaactttacatttaacaattgagttaattggttgaacaatttaatcaaatacttgtttaattttctaatttaggagacatatttctt |
26314647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 20615239 - 20615314
Alignment:
| Q |
21 |
gaaatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattc |
96 |
Q |
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|||||||||||||| |||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||| |
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| T |
20615239 |
gaaatatcttggtgctcactcatgtagcaattaagatatgatccatcaagaccattttgatctccactctgtattc |
20615314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 21642346 - 21642402
Alignment:
| Q |
25 |
tatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgat |
81 |
Q |
| |
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|||||||||||||| ||||||| |||||||| ||||| ||||||||||| ||||||| |
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|
| T |
21642346 |
tatcttggtgttcattcatgtaacaatcaagatatgatccatcaagaccgttttgat |
21642402 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0927 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0927
Description:
Target: scaffold0927; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 386 - 217
Alignment:
| Q |
14 |
ttcactggaaatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattcatcc----atgataatt |
109 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | || |||||| |
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| T |
386 |
ttcactggaaatatcctgatgttcactcatgtagcaatcaagatatgacccgtcaagaccattttgatctccactctgcattcattcattgataataatt |
287 |
T |
|
| Q |
110 |
cttatcattagaactttacttttaacaattgagttaattggttgaacaatttaatcaaatatttgtttaa |
179 |
Q |
| |
|
||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
286 |
cttatcattagaactttacattttacaattgtgttaattggttgaacaatttaatcaaatacttgtttaa |
217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 24080726 - 24080577
Alignment:
| Q |
20 |
ggaaatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattcatccatg----ataattcttatc |
115 |
Q |
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|
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
24080726 |
ggaaatatcttggtgttcactcatgaagcaatcaagatatgacccatcaagaccattttgatctccactctacattcatccatggataataattcttatc |
24080627 |
T |
|
| Q |
116 |
attagaactttacttttaacaattgagttaattggttgaacaatttaatca |
166 |
Q |
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||||||||||||| ||||||| ||||| |||| ||| ||||||| |||||| |
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| T |
24080626 |
attagaactttacatttaacagttgag-taatcggtagaacaatataatca |
24080577 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 166
Target Start/End: Original strand, 24070010 - 24070159
Alignment:
| Q |
20 |
ggaaatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattcatccatg----ataattcttatc |
115 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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|
| T |
24070010 |
ggaaatatcttggtgttcactcttgaagcaatcaagatatgacccatcaagaccattttgatcaccactctgcattcatccatggataataattcttatc |
24070109 |
T |
|
| Q |
116 |
attagaactttacttttaacaattgagttaattggttgaacaatttaatca |
166 |
Q |
| |
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||||||||||||| ||||||| ||||| |||| ||| ||||||| |||||| |
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| T |
24070110 |
attagaactttacatttaacagttgag-taatcggtagaacaatataatca |
24070159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 30399754 - 30399638
Alignment:
| Q |
25 |
tatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattcatccatg----ataattcttatcattag |
120 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| ||||| ||||||||||||||||||| | ||||||||||||| |||| ||||||| ||||||||| |
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|
| T |
30399754 |
tatcttggtgttcattcatgtaataatcaagatatgatccatcaagaccattttgatatatactctgcattcatgcatggataataattcatatcattag |
30399655 |
T |
|
| Q |
121 |
aactttacttttaacaa |
137 |
Q |
| |
|
||| | || |||||||| |
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|
| T |
30399654 |
aacatgacatttaacaa |
30399638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 2603145 - 2603069
Alignment:
| Q |
21 |
gaaatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatctccactctgcattca |
97 |
Q |
| |
|
||||| |||||||||||| ||||||||||||| || ||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
2603145 |
gaaatctcttggtgttcattcatgtagcaatctagatatgacccatcaagaccgttttgatctacactctgcattca |
2603069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 137
Target Start/End: Complemental strand, 2599991 - 2599877
Alignment:
| Q |
25 |
tatcttggtgttcactcatgtagcaatcaagg-tatgacccatcaagaccattttgatctccactctgcatt-catccatgataattcttatcattagaa |
122 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| | ||||| ||||||||||| ||||||||| |||||||||| |||| | ||||||| ||||||||||| |
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| T |
2599991 |
tatcttggtgttcattcatgtaacaatcaaagatatgatccatcaagaccgttttgatctaaactctgcattgcatcgacaataattcatatcattagaa |
2599892 |
T |
|
| Q |
123 |
ctttacttttaacaa |
137 |
Q |
| |
|
| | || |||||||| |
|
|
| T |
2599891 |
catgacatttaacaa |
2599877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 2591859 - 2591799
Alignment:
| Q |
23 |
aatatcttggtgttcactcatgtagcaatcaaggtatgacccatcaagaccattttgatct |
83 |
Q |
| |
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||||| |||||||||| ||||||| |||||||| ||||| ||||||||||| ||||||||| |
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|
| T |
2591859 |
aatattttggtgttcattcatgtaacaatcaagatatgatccatcaagaccgttttgatct |
2591799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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