View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12731_high_1 (Length: 419)
Name: NF12731_high_1
Description: NF12731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12731_high_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 11 - 413
Target Start/End: Complemental strand, 48585796 - 48585394
Alignment:
| Q |
11 |
cagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48585796 |
cagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttcgctttcgagttctttgatga |
48585697 |
T |
|
| Q |
111 |
tggtttaccagacggtgatcgttcagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaattatcaagaat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48585696 |
tggtttaccagacggtgatcgttcagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaatgatcaagaat |
48585597 |
T |
|
| Q |
211 |
catgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacacaatattccttctgttttat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48585596 |
catgctgatttaaacaaaccattttcatgtatcataaacaattatttttttccatgggtttgtgatgttgctaatgaacacaatattccttctgttttat |
48585497 |
T |
|
| Q |
311 |
catggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaaccttatattgatgtccatct |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
48585496 |
catggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaaccttatattgatgttcaact |
48585397 |
T |
|
| Q |
411 |
cat |
413 |
Q |
| |
|
||| |
|
|
| T |
48585396 |
cat |
48585394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 11 - 404
Target Start/End: Complemental strand, 48640369 - 48639976
Alignment:
| Q |
11 |
cagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatga |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |
|
|
| T |
48640369 |
cagagacggctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttcgctttcgagttctttgacga |
48640270 |
T |
|
| Q |
111 |
tggtttaccagacggtgatcgttcagccttcagagctcttcagcactccgctgaaattgaggttgctggtagaccctctatttctcaaattatcaagaat |
210 |
Q |
| |
|
|||||||||||| || | |||| |||||||||||||||||||||| |||||||||||||||||||| |||| || |||||| ||||| || |||||| |
|
|
| T |
48640269 |
tggtttaccagatggcagtggttcggccttcagagctcttcagcactatgctgaaattgaggttgctggcagacactttatttcacaaatgataaagaat |
48640170 |
T |
|
| Q |
211 |
catgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacacaatattccttctgttttat |
310 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
48640169 |
catgccgattcaaacaaaccattttcatgtatcataaacaactatttttttccatgggtttgtgacgttgctaatgaacacaatattccttctgttttgt |
48640070 |
T |
|
| Q |
311 |
catggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaaccttatattgatgt |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48640069 |
catggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacatctttccctacaaatgaagaaccttatattgatgt |
48639976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 191 - 404
Target Start/End: Complemental strand, 48661841 - 48661628
Alignment:
| Q |
191 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
290 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||||||| |||||||| ||||||||||| ||||||||||||||| | ||| |||||| |
|
|
| T |
48661841 |
tttctcaaatgatcaagaatcatgctgattcaaacaaaccaatttcatgtgtcataaacaatccatttcttccatgggtttgtgatatagcttttgaaca |
48661742 |
T |
|
| Q |
291 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaa |
390 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||| ||| ||||| || || |||| |||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
48661741 |
caatattccttctgctttattatggactaattccagtgcagtttttgccgtttgctatgactatgtccacaaattggtacctttcccatcaaatgaagaa |
48661642 |
T |
|
| Q |
391 |
ccttatattgatgt |
404 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
48661641 |
ccttacattgatgt |
48661628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 189 - 404
Target Start/End: Complemental strand, 48667438 - 48667223
Alignment:
| Q |
189 |
tatttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaa |
288 |
Q |
| |
|
|||||||||||| || |||||||||||||||| ||||||||| |||||||||| |||||||| ||||||||| ||||| | ||| |||| |
|
|
| T |
48667438 |
tatttctcaaatgataaagaatcatgctgattcgaacaaaccaatttcatgtattataaacaaccctttttttccatgggttagtgatatagcttttgaa |
48667339 |
T |
|
| Q |
289 |
cacaatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaag |
388 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||||| |||||||||||||| || |||| | |||||||||||||| |||||||||| ||||||||| |
|
|
| T |
48667338 |
cacaatattccttctgctttgttatggactaattctagtgctgttttcaccatttgctatgattatgtccacaaattgttacctttcccttcaaatgaag |
48667239 |
T |
|
| Q |
389 |
aaccttatattgatgt |
404 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
48667238 |
aaccttatattgatgt |
48667223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 191 - 404
Target Start/End: Original strand, 48618046 - 48618259
Alignment:
| Q |
191 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
290 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
48618046 |
tttctcaaatgatcaagaatcatgctgattcaaacaaaccattttcatgtatcataaacaatccttttgttccatgggtttgtgatgtagctgatgaaca |
48618145 |
T |
|
| Q |
291 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaa |
390 |
Q |
| |
|
||||||||||| ||| | ||||| | | || |||||||||| | |||||||||||||| |||||||| | || ||||||| || | |||| |
|
|
| T |
48618146 |
tggtattccttctgctttgttatggattcaatcaactgctgttttttctgcttactataactatttccacaaactggtacgtttcccttcacaaacagaa |
48618245 |
T |
|
| Q |
391 |
ccttatattgatgt |
404 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
48618246 |
ccttatattgatgt |
48618259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 191 - 404
Target Start/End: Complemental strand, 48629155 - 48628942
Alignment:
| Q |
191 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
290 |
Q |
| |
|
||||| |||| ||||||||||||||||||| || |||||| |||||||||||||| ||||| ||||||||||| ||||| ||| |||||| |
|
|
| T |
48629155 |
tttctaaaatgatcaagaatcatgctgattcaagtaaaccaatttcatgtatcatatacaatccttttcttccatgggtttgcgatgtagcttttgaaca |
48629056 |
T |
|
| Q |
291 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaa |
390 |
Q |
| |
|
| |||||||||| ||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| | |||||| ||| || | |||| |
|
|
| T |
48629055 |
tgacattccttctgctttatcatggaataattctagtgctgttttcgccacttactataactatgtccacaaacttgtaccttttccttcagaaacagaa |
48628956 |
T |
|
| Q |
391 |
ccttatattgatgt |
404 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
48628955 |
ccttatattgatgt |
48628942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 191 - 404
Target Start/End: Complemental strand, 48653409 - 48653196
Alignment:
| Q |
191 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
290 |
Q |
| |
|
|||||||||| ||||||||||||||||| | |||||||||| |||||||| ||||||| ||| || |||||||||||||| ||| ||||||| |
|
|
| T |
48653409 |
tttctcaaatgatcaagaatcatgctgagtcaaacaaaccaatttcatgtctcataaataatccctttcttccttgggtttgtgatgtagctgatgaaca |
48653310 |
T |
|
| Q |
291 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccacaaattaacacctttccctacaaatgaagaa |
390 |
Q |
| |
|
||||||||||||||||| |||| | | ||| | |||||| | ||| ||||||| |||||| |||||||| | || ||||||| ||||||||||| |
|
|
| T |
48653309 |
tggtattccttctgttttattatgggttcaatccaccgctgttcttaccgcttactacaactatttccacaaactggtacgtttcccttcaaatgaagaa |
48653210 |
T |
|
| Q |
391 |
ccttatattgatgt |
404 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
48653209 |
ccttatattgatgt |
48653196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 193 - 315
Target Start/End: Complemental strand, 11547518 - 11547396
Alignment:
| Q |
193 |
tctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaacaca |
292 |
Q |
| |
|
|||||||| ||||||||||||| ||| | |||||||||| |||| ||||||||||||||| || |||||||||||||| ||| ||||||| |
|
|
| T |
11547518 |
tctcaaatgatcaagaatcatgttgagtcaaacaaaccaatttcttgtatcataaacaatccttttgttccttgggtttgtgatgtagctcatgaacatg |
11547419 |
T |
|
| Q |
293 |
atattccttctgttttatcatgg |
315 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
11547418 |
gtattccttctgttttattatgg |
11547396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 48653558 - 48653483
Alignment:
| Q |
42 |
taacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatggttta |
117 |
Q |
| |
|
||||||||||||||| |||| | |||||||||||||||||| | || |||| ||||||||||||||| ||||| |
|
|
| T |
48653558 |
taacaacatcattgaaaaatcattcactccaattggtgatggttcactcacttttgagttctttgatgattgttta |
48653483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 48661958 - 48661896
Alignment:
| Q |
56 |
acaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatggtttac |
118 |
Q |
| |
|
|||||||||||||||| || ||||||||| || || |||||||||||||||| || |||||| |
|
|
| T |
48661958 |
acaaattagcaactccgataggtgatggttctctcattttcgagttctttgatcatagtttac |
48661896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 262 - 404
Target Start/End: Complemental strand, 27228385 - 27228243
Alignment:
| Q |
262 |
ccatgggtttgtgatgttgctaatgaacacaatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactatgtccaca |
361 |
Q |
| |
|
||||||||| ||||||| ||| ||||| | | |||||||||| ||||| ||||| | | |||| |||||||||| | |||||||||||||| | |||| |
|
|
| T |
27228385 |
ccatgggttagtgatgtagctgctgaactcgagattccttctgctttattatggattcaatccggtgctgttttcgcagcttactataactattttcaca |
27228286 |
T |
|
| Q |
362 |
aattaacacctttccctacaaatgaagaaccttatattgatgt |
404 |
Q |
| |
|
|| | || ||||||| | |||| |||||||||||||||||| |
|
|
| T |
27228285 |
aactggtacgtttcccttcgaatgcagaaccttatattgatgt |
27228243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 354
Target Start/End: Original strand, 19665402 - 19665565
Alignment:
| Q |
191 |
tttctcaaattatcaagaatcatgctgatttaaacaaaccattttcatgtatcataaacaattannnnnnnccatgggtttgtgatgttgctaatgaaca |
290 |
Q |
| |
|
|||||||||| || ||||||||| ||| | ||||||||| |||| || |||||||||||| ||||||||||||||||| ||| | |||| |
|
|
| T |
19665402 |
tttctcaaatgattaagaatcataatgagtcaaacaaacctatttcttgcatcataaacaatccttttcttccatgggtttgtgatgtagcttctcaaca |
19665501 |
T |
|
| Q |
291 |
caatattccttctgttttatcatggactaattccgctgctgttttcaccacttactataactat |
354 |
Q |
| |
|
|||||||||||| ||| | ||||| | | ||| ||||||||||||| |||||||||||||| |
|
|
| T |
19665502 |
tgatattccttctgctttgttatggattcaatccactgctgttttcactgcttactataactat |
19665565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 19665230 - 19665328
Alignment:
| Q |
19 |
gctggcaaaaacatgcgagctgctaacaacatcattgacaaattagcaactccaattggtgatggtactttctctttcgagttctttgatgatggttta |
117 |
Q |
| |
|
||||||||| |||||| | ||| ||||||||||| | |||||| | |||||||| ||||||||| || || |||| | |||||||||||||||||| |
|
|
| T |
19665230 |
gctggcaaagacatgcaaactgttaacaacatcactcacaaatcactcactccaataggtgatggttctctcattttccacttctttgatgatggttta |
19665328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University