View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12731_high_4 (Length: 245)
Name: NF12731_high_4
Description: NF12731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12731_high_4 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 34499900 - 34499667
Alignment:
| Q |
1 |
tggttcctatcttcaacaccagaattacagagggggcaagtagtgtccagagaaataccttttttactgagattacatctggtaggaagaatattgcttc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34499900 |
tggttcctatcttcaacaccagaattacagagggggcaagtagtgtccagagaaataccttttttactgagattacatctggtaggaagaatattgcttg |
34499801 |
T |
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| Q |
101 |
ctagcctccaaaggaagttttgcgcgcttctagggccgttgaatttccagattctgctccagacctccgtatcacgcacagaagatgtctcagccatctc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34499800 |
ctagcctccaaaggaagttttgcgcgcttctagggccgttgaatttctagattctgctccagacctccgtatcacgcacagtagatgtctcagccatctc |
34499701 |
T |
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| Q |
201 |
tttggatttggtctcgcaaagcaaatgatgtcca |
234 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
34499700 |
tttggatttggtctcgcaaagcaaatgatgtcca |
34499667 |
T |
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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 8367821 - 8367925
Alignment:
| Q |
45 |
gtccagagaaataccttttttactgagattacatctggtaggaagaatattgcttcctagcctccaaaggaagttttgcgcgcttctagggccgttgaat |
144 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| | |||| ||||||||| ||||| ||||| || || || ||||| |
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| T |
8367821 |
gtccagagatataccttttttactgagattacatctggtagggagaatgttgctagcaagccgccaaaggaaattttgggcgctcctgggaccattgaaa |
8367920 |
T |
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| Q |
145 |
ttcca |
149 |
Q |
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||||| |
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| T |
8367921 |
ttcca |
8367925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 199315 - 199419
Alignment:
| Q |
45 |
gtccagagaaataccttttttactgagattacatctggtaggaagaatattgcttcctagcctccaaaggaagttttgcgcgcttctagggccgttgaat |
144 |
Q |
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|||||||| ||||| ||||| |||||||||||||||||||| ||| | ||||| | |||| ||||||||| |||||| |||| || || || ||||| |
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| T |
199315 |
gtccagagttataccatttttgctgagattacatctggtagggagactgttgctagcaagccgccaaaggaaattttgcacgctcctgggaccattgaaa |
199414 |
T |
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| Q |
145 |
ttcca |
149 |
Q |
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||||| |
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| T |
199415 |
ttcca |
199419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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