View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12731_high_5 (Length: 245)
Name: NF12731_high_5
Description: NF12731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12731_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 43297156 - 43296952
Alignment:
| Q |
1 |
aaggtaaaaagt-acaaagttttcccttactgttatggtcaatgtgnnnnnnnnnnnncttgcacgataatcctaagaatctaagttaaaatcatgctta |
99 |
Q |
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| T |
43297156 |
aaggtaaaaagtcacaaagttttcccttactgttatggtcaatgtgttttttctttttcttgcacgataatcctaagaatctaagttaaaatcatgctta |
43297057 |
T |
|
| Q |
100 |
tacgaaaaagtcgttcaatttaattagtaaattttcaagctgtaggattttcttttagttttgttacatttaaacgtttgtttctattgtaggatcactt |
199 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43297056 |
tacgaaaaagtcgttcaatttaattagt-----ttcaagctgtaggattttcttttagttttgttacttttaaacgtttgtttctattgtaggatcactt |
43296962 |
T |
|
| Q |
200 |
tgaaagaagt |
209 |
Q |
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|||||||||| |
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| T |
43296961 |
tgaaagaagt |
43296952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 201
Target Start/End: Complemental strand, 43280970 - 43280867
Alignment:
| Q |
97 |
ttatacgaaaaagtcgttcaatttaattagtaaattttcaagctgtaggattttcttttagttttgttacatttaaacgtttgtttctattgtaggatca |
196 |
Q |
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|||||| ||||||| || |||||||| |||| ||||||| |||||| |||||| |||||||| ||| ||||| | |||||||||| ||||||||||| |
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| T |
43280970 |
ttatacaaaaaagtaatttaatttaatcagtagattttcatgctgtaaaattttcaattagtttt-ttatatttagatgtttgtttctgttgtaggatca |
43280872 |
T |
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| Q |
197 |
ctttg |
201 |
Q |
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|||| |
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| T |
43280871 |
ttttg |
43280867 |
T |
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