View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12731_low_1 (Length: 464)

Name: NF12731_low_1
Description: NF12731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12731_low_1
NF12731_low_1
[»] chr5 (19 HSPs)
chr5 (21-454)||(15812249-15812682)
chr5 (21-447)||(15728593-15729019)
chr5 (60-414)||(10133518-10133875)
chr5 (21-415)||(22909933-22910329)
chr5 (103-377)||(32695642-32695919)
chr5 (21-390)||(27688876-27689248)
chr5 (21-409)||(23248635-23249028)
chr5 (35-390)||(8241616-8241973)
chr5 (182-418)||(28335558-28335796)
chr5 (67-246)||(28443612-28443791)
chr5 (21-366)||(22416211-22416559)
chr5 (21-390)||(27496284-27496653)
chr5 (237-415)||(27949703-27949881)
chr5 (241-367)||(36519644-36519770)
chr5 (241-415)||(31470941-31471115)
chr5 (237-419)||(41615131-41615313)
chr5 (260-341)||(24854687-24854768)
chr5 (21-150)||(28335795-28335924)
chr5 (37-149)||(27949953-27950065)
[»] chr8 (13 HSPs)
chr8 (21-409)||(28285487-28285877)
chr8 (21-345)||(16796002-16796329)
chr8 (237-366)||(41835909-41836038)
chr8 (240-419)||(11458033-11458212)
chr8 (242-374)||(19330084-19330216)
chr8 (263-374)||(24831979-24832090)
chr8 (260-383)||(10524-10647)
chr8 (21-196)||(14194125-14194300)
chr8 (21-171)||(12191373-12191522)
chr8 (21-171)||(12435801-12435950)
chr8 (241-341)||(12573340-12573440)
chr8 (245-313)||(21217790-21217858)
chr8 (242-294)||(21446182-21446234)
[»] chr2 (17 HSPs)
chr2 (35-414)||(37126504-37126885)
chr2 (101-322)||(33946102-33946326)
chr2 (120-403)||(21483839-21484125)
chr2 (101-318)||(25630613-25630833)
chr2 (32-211)||(2734560-2734739)
chr2 (237-415)||(18964517-18964695)
chr2 (231-342)||(15112107-15112218)
chr2 (211-368)||(5937077-5937234)
chr2 (237-368)||(34949730-34949861)
chr2 (260-342)||(5463172-5463254)
chr2 (275-419)||(35096244-35096388)
chr2 (238-349)||(42014863-42014973)
chr2 (113-195)||(42014750-42014832)
chr2 (144-344)||(41255369-41255571)
chr2 (292-415)||(32122259-32122382)
chr2 (237-304)||(32475467-32475534)
chr2 (83-160)||(5462992-5463069)
[»] chr7 (20 HSPs)
chr7 (21-390)||(1905602-1905976)
chr7 (32-415)||(1853513-1853899)
chr7 (60-419)||(19515925-19516295)
chr7 (237-415)||(22203441-22203619)
chr7 (241-373)||(1378654-1378786)
chr7 (83-368)||(33851302-33851590)
chr7 (237-374)||(15031371-15031508)
chr7 (237-368)||(109924-110055)
chr7 (237-368)||(26793221-26793352)
chr7 (220-374)||(18043882-18044036)
chr7 (260-368)||(35583852-35583960)
chr7 (211-374)||(7254131-7254297)
chr7 (260-331)||(29331066-29331137)
chr7 (232-342)||(38256273-38256383)
chr7 (232-342)||(38263848-38263958)
chr7 (237-342)||(37999887-37999992)
chr7 (261-368)||(43748003-43748110)
chr7 (237-344)||(2670064-2670171)
chr7 (33-163)||(1380233-1380363)
chr7 (33-163)||(1386337-1386467)
[»] chr4 (19 HSPs)
chr4 (123-409)||(49606379-49606668)
chr4 (21-390)||(23185821-23186196)
chr4 (237-366)||(11648920-11649049)
chr4 (237-368)||(44109186-44109317)
chr4 (237-331)||(53270656-53270750)
chr4 (260-383)||(55610475-55610598)
chr4 (237-374)||(52918257-52918394)
chr4 (142-342)||(29551903-29552106)
chr4 (238-342)||(38989469-38989573)
chr4 (273-419)||(8909966-8910112)
chr4 (260-374)||(40761184-40761298)
chr4 (237-342)||(40691746-40691851)
chr4 (131-284)||(12692517-12692674)
chr4 (300-415)||(7631070-7631185)
chr4 (327-418)||(34952651-34952742)
chr4 (237-383)||(6369415-6369561)
chr4 (282-371)||(45658276-45658366)
chr4 (237-347)||(37397025-37397130)
chr4 (354-414)||(12692685-12692745)
[»] chr3 (24 HSPs)
chr3 (21-344)||(51327448-51327773)
chr3 (21-344)||(10493326-10493648)
chr3 (21-419)||(12718699-12719100)
chr3 (21-390)||(25213241-25213616)
chr3 (21-224)||(24628829-24629031)
chr3 (60-316)||(27025059-27025318)
chr3 (60-321)||(27036295-27036559)
chr3 (83-374)||(21449271-21449562)
chr3 (83-383)||(9331745-9332048)
chr3 (237-374)||(18877259-18877396)
chr3 (237-368)||(21978656-21978787)
chr3 (237-368)||(22001087-22001218)
chr3 (245-342)||(8485201-8485298)
chr3 (237-342)||(3940215-3940320)
chr3 (239-368)||(44206479-44206608)
chr3 (237-342)||(47373535-47373640)
chr3 (32-175)||(23333481-23333624)
chr3 (274-383)||(41973433-41973542)
chr3 (240-318)||(51135472-51135550)
chr3 (280-368)||(48063458-48063546)
chr3 (232-368)||(49326077-49326213)
chr3 (201-269)||(23333638-23333709)
chr3 (132-188)||(4812130-4812186)
chr3 (83-175)||(41973239-41973331)
[»] scaffold0001 (1 HSPs)
scaffold0001 (33-370)||(425849-426189)
[»] chr1 (23 HSPs)
chr1 (60-408)||(34550331-34550682)
chr1 (144-419)||(28638796-28639074)
chr1 (35-424)||(48181122-48181514)
chr1 (60-419)||(7563148-7563510)
chr1 (237-415)||(30517105-30517283)
chr1 (33-241)||(41367920-41368127)
chr1 (260-368)||(18277751-18277859)
chr1 (237-368)||(22334224-22334355)
chr1 (238-331)||(17384671-17384763)
chr1 (211-331)||(7198772-7198892)
chr1 (17-323)||(11355413-11355722)
chr1 (237-383)||(4852580-4852726)
chr1 (83-342)||(10221853-10222115)
chr1 (260-383)||(39599431-39599554)
chr1 (238-330)||(10311465-10311557)
chr1 (211-342)||(5748592-5748723)
chr1 (266-347)||(35988796-35988877)
chr1 (132-311)||(43074978-43075159)
chr1 (110-185)||(15248432-15248507)
chr1 (60-160)||(30516925-30517025)
chr1 (101-184)||(15499936-15500019)
chr1 (142-195)||(7492894-7492947)
chr1 (328-360)||(15248254-15248286)
[»] scaffold0048 (3 HSPs)
scaffold0048 (161-419)||(54820-55081)
scaffold0048 (161-327)||(86963-87132)
scaffold0048 (17-111)||(86815-86909)
[»] chr6 (13 HSPs)
chr6 (101-409)||(20819684-20819995)
chr6 (103-368)||(19626535-19626800)
chr6 (60-415)||(20386669-20387027)
chr6 (237-419)||(17520915-17521097)
chr6 (202-419)||(25172866-25173086)
chr6 (83-368)||(13038146-13038434)
chr6 (21-197)||(25176451-25176626)
chr6 (21-187)||(17521131-17521296)
chr6 (284-368)||(34950110-34950194)
chr6 (260-342)||(29436172-29436254)
chr6 (144-197)||(32420191-32420244)
chr6 (144-197)||(32426032-32426085)
chr6 (295-419)||(12304071-12304195)
[»] scaffold0210 (1 HSPs)
scaffold0210 (21-419)||(6818-7218)
[»] scaffold0064 (1 HSPs)
scaffold0064 (34-388)||(61586-61942)
[»] scaffold0054 (1 HSPs)
scaffold0054 (30-368)||(17582-17916)
[»] scaffold0127 (1 HSPs)
scaffold0127 (60-233)||(36884-37057)
[»] scaffold0168 (1 HSPs)
scaffold0168 (238-368)||(16728-16858)
[»] scaffold0160 (1 HSPs)
scaffold0160 (83-182)||(7467-7566)


Alignment Details
Target: chr5 (Bit Score: 390; Significance: 0; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 21 - 454
Target Start/End: Original strand, 15812249 - 15812682
Alignment:
Q  21 caagctagttacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcga 120  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  15812249 caagctagttacagtgtactacaacggggagaaaccaatccatctatttaggattcacacttatgtcgccctctctgtgttgaagggtcagctggatcga 15812348  T
Q  121 atcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccgga 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  15812349 atcaaccgccaactcaactaaagagacacacggagggtggatggtgttcagtatcgacatccatcgatcgactcagccaggagtgtgcggttcacccgga 15812448  T
Q  221 tgaagcttatgaacggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgt 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15812449 tgaagcttatgaacggcgacgtgagaaccatattcttgatctttggtcaatacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgt 15812548  T
Q  321 tgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgatctgtgg 420  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||    
T  15812549 tgaacaaattcataaaagtttgatccgacccaagaactacgaagagattagggcactcttggacgcaccatatgaagacattaatttagctgatctgtgg 15812648  T
Q  421 tatgaatgtcatcaaagggtccatattgtctctg 454  Q
    ||||||||||||||||||||||||||||||||||    
T  15812649 tatgaatgtcatcaaagggtccatattgtctctg 15812682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 21 - 447
Target Start/End: Original strand, 15728593 - 15729019
Alignment:
Q  21 caagctagttacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcga 120  Q
    |||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  15728593 caagctagctacagtttactacaacggggagaaaccaatccatttgttcaggattcacacttatgtcgccctctccgtgttgaagggtcagctggatcga 15728692  T
Q  121 atcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccgga 220  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||  |||||||||||||||||||||    
T  15728693 atcaaccgccaactcaactaaagagacacacagagggtggatggtgttgagtatcgacatccatcgatcgactcagccgggagtgtgcggttcacccgga 15728792  T
Q  221 tgaagcttatgaacggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgt 320  Q
    ||| || |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||    
T  15728793 tgatgcctatgaacgacgatgtgagaaccatattcttgatctttggtcagtacagtactagagggccgatcgagttagacgcttcgttggtcatatatgt 15728892  T
Q  321 tgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgatctgtgg 420  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | || |||||    
T  15728893 tgaacaaattcataaaagtttgatccgaccgaagaactacgaagagattagggcactcctggacgcaccatatgaagacattaatttagctcatatgtgg 15728992  T
Q  421 tatgaatgtcatcaaagggtccatatt 447  Q
    ||||| | |||||||||||||||||||    
T  15728993 tatgattctcatcaaagggtccatatt 15729019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 60 - 414
Target Start/End: Original strand, 10133518 - 10133875
Alignment:
Q  60 ccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtg 159  Q
    |||||| |||| |||||||||| ||||| || ||||   | |||||| ||||||||||| ||||||||||||||||||| | | |||||| |||||||||    
T  10133518 ccatctgttcatgattcacactgatgtcaccatctccaggttgaaggatcagctggatcaaatcaaccgccaactcaaccacaaagacacgcggagggtg 10133617  T
Q  160 gatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatgaac---ggcgacgtgagaaccatattct 256  Q
    || | ||||||||||| ||||||||| | ||||||||| ||||||||| |||||| |||||||||||| ||||||   | |||||||||||| || || |    
T  10133618 gacgatgttgagtatcgacatccatcaaccgactcagccaggagtgtgtggttcagccggatgaagctcatgaacgatgacgacgtgagaactatgttat 10133717  T
Q  257 tgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaa 356  Q
     ||||||| |  ||||||||||| ||||| |||||||||||||| ||| |||||| |||| |||||||||||| ||||||||||||||| | |||| |||    
T  10133718 cgatcttttgatagtacagtactggaggatcgatcgagttggacactttgttggtaagatctgttgaacaaatccataaaagtttgatccggcccaggaa 10133817  T
Q  357 ctacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgat 414  Q
    |||||||||||| | |||||| |||||| ||||| | ||||| |||| ||||| ||||    
T  10133818 ctacgaagagatcatggcactgctggacacaccagacgaagacattagtttagctgat 10133875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 21 - 415
Target Start/End: Original strand, 22909933 - 22910329
Alignment:
Q  21 caagctagttacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcga 120  Q
    |||||||| | ||||||||||||| ||||| ||||||  |||| | ||||||||||||| | ||||| ||||||| | | ||||| |||||||| ||| |    
T  22909933 caagctagctgcagtttactacaatgggga-aaaccaccccatttcttcaggattcacaatgatgtcaccctctccgggttgaagagtcagctgaatcaa 22910031  T
Q  121 atcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccgga 220  Q
    ||||||| | |||||||||| |||||||||||||||||||||||||||||||||| || |   |||| | |||||||  |||| |||||| |||| ||||    
T  22910032 atcaacctcgaactcaactacagagacacacggagggtggatggtgttgagtatcgacgtttgtcgaccaactcagctgggagagtgcggctcactcgga 22910131  T
Q  221 tgaagcttatgaacggcgac---gtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagata 317  Q
    ||||||| ||||||| ||||   ||||||||||| ||||  ||||||||||| | |||||||||||| | |||||||||  ||||||||||||||| |||    
T  22910132 tgaagctcatgaacgacgacgacgtgagaaccatgttctccatctttggtcaattcagtactagagggctgatcgagttaaacgcttcgttggtcaaata 22910231  T
Q  318 tgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgatc 415  Q
    ||||||||| ||||   ||||||||||  | || | |||||||||||| |||||||||||  ||||||||||| | ||||| |||| ||||| |||||    
T  22910232 tgttgaacatattcgacaaagtttgattcggccaaggaactacgaagaaattagggcactaatggacgcaccacacgaagacattagtttagatgatc 22910329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 103 - 377
Target Start/End: Complemental strand, 32695919 - 32695642
Alignment:
Q  103 aagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaagga 202  Q
    |||||||| ||||||| ||||||||| ||||||||| | ||| || ||||||||||||| |||||| |||||| || |||||||| |||||||     ||    
T  32695919 aagggtcaactggatcaaatcaaccgtcaactcaacgacagacacgcacggagggtggacggtgttaagtatcgacgtccatcgaccgactcattcgaga 32695820  T
Q  203 gtgtgcggttcacccggatgaagcttatgaa---cggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttgga 299  Q
     |||||||||||  ||| ||||||| |||||   || ||||||||||| | | |||| ||||||||||||||||| ||||| ||||||||||||||||||    
T  32695819 atgtgcggttcaatcggttgaagctcatgaatgacgacgacgtgagaatcgtgttctcgatctttggtcagtacaatactaaaggaccgatcgagttgga 32695720  T
Q  300 cgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggcact 377  Q
    ||||| ||||||||||| ||||||||||||||| |||||||||||||| |||||||||| ||||||||| | ||||||    
T  32695719 cgctttgttggtcagatctgttgaacaaattcagaaaagtttgatctggcccaagaactgcgaagagatcatggcact 32695642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 21 - 390
Target Start/End: Original strand, 27688876 - 27689248
Alignment:
Q  21 caagctagttacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcga 120  Q
    |||||||| | ||||||||||||||||||  ||||||  ||| || || ||||||  |||| ||||| |||||||     |||||| |||||| |||| |    
T  27688876 caagctagctgcagtttactacaacgggggaaaaccatcccacctgtttaggatttgcactcatgtcaccctctccagattgaaggatcagctcgatcaa 27688975  T
Q  121 atcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccgga 220  Q
    || |||| |||||||||  | | ||| |||| |||| |||| ||||||||| ||| |  | ||||||  |||| ||| ||||||||||||| || |||||    
T  27688976 ataaaccaccaactcaagcacatagatacacagaggatggacggtgttgagcatcgatgtacatcgactgacttagccaggagtgtgcggtccagccgga 27689075  T
Q  221 tgaagcttatgaacggcgac---gtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagata 317  Q
    ||||||| || || | | ||   ||||||||||| |||| ||||||||||||||||||||||| |||||||||| ||||||||||||| |||||| |||     
T  27689076 tgaagctcataaaggacaacaacgtgagaaccatgttctcgatctttggtcagtacagtactataggaccgatcaagttggacgcttcattggtctgatt 27689175  T
Q  318 tgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcacca 390  Q
    ||||||||||||||| |||||||||||| | |||| ||||||||||||||| || |||||  ||||| |||||    
T  27689176 tgttgaacaaattcagaaaagtttgatccggcccaggaactacgaagagatcagagcactggtggacacacca 27689248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 21 - 409
Target Start/End: Complemental strand, 23249028 - 23248635
Alignment:
Q  21 caagctagttacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcga 120  Q
    |||||||| | | |||| ||||||||||| |||||||  |||||| |||||||||| |||| ||||| || |||| | | ||||| |||| ||| |||      
T  23249028 caagctagctgcggttttctacaacgggg-gaaaccaccccatctgttcaggattcccactgatgtcaccttctccgggttgaagagtcaactgaatcat 23248930  T
Q  121 atcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccgga 220  Q
    || ||||   || ||||||| ||||||||||  |||||||||| |||| |||||  || |   |||| |||||||||  ||||||||||||||| | |||    
T  23248929 attaaccttgaattcaactatagagacacacatagggtggatgttgttaagtattgacgtttgtcgaccgactcagccgggagtgtgcggttcagctgga 23248830  T
Q  221 tgaagcttatgaacggcgacg------tgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcag 314  Q
    ||||||| ||||||| |||||      |||||||||| ||||  |||||||||||||  |||||||||||  |||||||||||||| |||||||||||||    
T  23248829 tgaagctcatgaacgacgacgacgacgtgagaaccatgttctccatctttggtcagtttagtactagagggtcgatcgagttggacacttcgttggtcag 23248730  T
Q  315 atatgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttag 409  Q
    || ||||||||| |||||  ||| ||||||| | ||||  |||||||||||||| ||||||||  ||||||||||| | ||||| ||||||||||    
T  23248729 atctgttgaacatattcaacaaaatttgatccggcccagaaactacgaagagatcagggcactaatggacgcaccagacgaagagattaatttag 23248635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 35 - 390
Target Start/End: Original strand, 8241616 - 8241973
Alignment:
Q  35 tttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaact 134  Q
    ||||||||||| |||| ||||||  |||  | || |||||||||||| ||||| ||||||    | |||||| ||| ||||||| ||||||||| |||||    
T  8241616 tttactacaacagggaaaaaccaccccacatgtttaggattcacactgatgtcaccctctacaggttgaaggatcatctggatcaaatcaaccgtcaact 8241715  T
Q  135 caactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatga-- 232  Q
    |||  | ||||||||  ||| |||||||||||||| ||||| || |||||||||| || ||||  ||||||||| ||||| |||||||||| | ||||      
T  8241716 caatcacagagacacgaggatggtggatggtgttgggtatcgacgtccatcgatcaacccagctgggagtgtgcagttcagccggatgaagatcatgagc 8241815  T
Q  233 -acggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattc 331  Q
     ||| ||||||||||||||| |||| |||||||||||| ||| | |||| |||| || ||||||||||   ||||| |||  ||| ||||||||||||||    
T  8241816 gacgacgacgtgagaaccatgttctcgatctttggtcactacggcactaaagga-cggtcgagttggaaagttcgtaggtatgatctgttgaacaaattc 8241914  T
Q  332 ataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcacca 390  Q
    | ||||||||||| || |||| ||||||||||||||||| ||| || || |||||||||    
T  8241915 agaaaagtttgatatggcccaggaactacgaagagattaaggctctgctagacgcacca 8241973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 182 - 418
Target Start/End: Complemental strand, 28335796 - 28335558
Alignment:
Q  182 catcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatgaacggcgacg---tgagaaccatattcttgatctttggtcagtacagtac 278  Q
    |||||| |||||||||  | | ||||||||||   ||||||||||| ||||||| |||||   |||||| ||| ||||  |||||| |||| ||||||||    
T  28335796 catcgaccgactcagccggtattgtgcggttcggtcggatgaagctcatgaacgacgacgacgtgagaatcatgttctcaatcttttgtcaatacagtac 28335697  T
Q  279 tagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggcactc 378  Q
    |||||| | |||||||||||| | |||||||||||||| |||||||||||||||  ||||||||||| | ||||| |||||||||||||| |||||||||    
T  28335696 tagagggc-gatcgagttggatgtttcgttggtcagatttgttgaacaaattcaggaaagtttgatccggcccaaaaactacgaagagatcagggcactc 28335598  T
Q  379 ctggacgcaccatatgaagaaattaatttagttgatctgt 418  Q
    || ||||||||| |   ||| |||||||||||||||||||    
T  28335597 cttgacgcaccacacagagacattaatttagttgatctgt 28335558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 67 - 246
Target Start/End: Complemental strand, 28443791 - 28443612
Alignment:
Q  67 ttcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtggatggtg 166  Q
    ||||||||||||||| ||||| || |||||| | |||||| ||||||||||| |||||||| |||||||||| | |||||||| ||||||||||| | ||    
T  28443791 ttcaggattcacactgatgtcaccttctctgggttgaaggatcagctggatcaaatcaaccaccaactcaaccacagagacacgcggagggtggacgatg 28443692  T
Q  167 ttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatgaacggcgacgtgaga 246  Q
    ||||||||| |  ||||||||  |||  ||   ||||||||||||||| |||||||||||| ||||||| ||||||||||    
T  28443691 ttgagtatcgatgtccatcgactgacctagatgggagtgtgcggttcagccggatgaagctcatgaacgacgacgtgaga 28443612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 366
Target Start/End: Original strand, 22416211 - 22416559
Alignment:
Q  21 caagctagttacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcga 120  Q
    |||||||| | || ||||||||||  |||  |||||| | ||||| |||| |||||| ||| ||||| | ||||  | | |||||||| | || |||| |    
T  22416211 caagctagctgcaatttactacaataggggaaaaccacttcatctgttcatgattcaaactgatgtcacgctcttcgggttgaagggtgaactagatcaa 22416310  T
Q  121 atcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccgga 220  Q
    |||||||  ||| ||||| | | ||| ||| ||| || | |||||||||||||| ||| |||||||| | ||||||| ||   |||||||||||  ||||    
T  22416311 atcaaccatcaattcaaccacaaagatacaaggaaggcgaatggtgttgagtat-aacgtccatcgaccaactcagctagatttgtgcggttcagtcgga 22416409  T
Q  221 tgaagcttatgaac---ggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagata 317  Q
    ||||||| | ||||   |  |||||||||||||| ||||  |  | ||||||||||||||||| ||||||| |||||||||||||||||||||||||||     
T  22416410 tgaagctcaagaacgaagatgacgtgagaaccatgttctcaaaatgtggtcagtacagtactaaaggaccggtcgagttggacgcttcgttggtcagatc 22416509  T
Q  318 tgttgaacaaattca-taaaagtttgatctgacccaagaactacgaagag 366  Q
    ||||||| |||||||  |||||||||||| | |||| ||||||| |||||    
T  22416510 tgttgaagaaattcagcaaaagtttgatccggcccaggaactactaagag 22416559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 21 - 390
Target Start/End: Complemental strand, 27496653 - 27496284
Alignment:
Q  21 caagctagttacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcga 120  Q
    |||||||| | || |||| |||||||||| |||||||  |||| | ||||| ||||||| | ||||| ||||||  | | ||||| | |||||  ||| |    
T  27496653 caagctagctgcaatttattacaacggggggaaaccaccccatatgttcagaattcacaatgatgtcaccctcttcgggttgaagagccagctaaatcaa 27496554  T
Q  121 atcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccgga 220  Q
    ||||||| | |||||||||| |||||||||| ||||||| ||||||||||||||| || | | |||||||||||||   || |||||||||||| |||||    
T  27496553 atcaacctcgaactcaactacagagacacacagagggtgaatggtgttgagtatcgacgttcgtcgatcgactcagtcgggggtgtgcggttcagccgga 27496454  T
Q  221 tgaagcttatgaac---------ggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggt 311  Q
    ||||||| ||||||         | |||||||||| |||| ||||  ||||||||||||         | ||| | |||||||||||| |||||||||||    
T  27496453 tgaagctcatgaacgacgacgatgacgacgtgagagccatcttctccatctttggtcag---------ataggtcagatcgagttggatgcttcgttggt 27496363  T
Q  312 cagatatgttgaacaaattcataaaagtttgatctgacccaa-gaactacgaagagattagggcactcctggacgcacca 390  Q
    ||| | ||||||||| |||||  |||||||||||  |||||| |||||| |||||||| ||||||||   ||||||||||    
T  27496362 caggtttgttgaacatattcaacaaagtttgatc-cacccaaggaactaagaagagatcagggcactaacggacgcacca 27496284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 237 - 415
Target Start/End: Complemental strand, 27949881 - 27949703
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    |||||||||||||||  |||   ||||| ||||| ||| ||||||| | ||||||||||||||||||| ||| || |||| ||||||| ||||||| |||    
T  27949881 cgacgtgagaaccatgatctatgtctttagtcagcacaatactagatggccgatcgagttggacgcttagttagttagatctgttgaaaaaattcaaaaa 27949782  T
Q  337 agtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgatc 415  Q
    ||||||||| |||||||||||||||||||||| ||||| || ||||| | |||| | |||||| ||| ||||| |||||    
T  27949781 agtttgatccgacccaagaactacgaagagatcagggctctgctggagggaccagaggaagaagttagtttaggtgatc 27949703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 241 - 367
Target Start/End: Original strand, 36519644 - 36519770
Alignment:
Q  241 gtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtt 340  Q
    ||||||||||| |||| ||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||||| || ||||||| ||||||| |||||||    
T  36519644 gtgagaaccatgttctcgatatttggtcagtacaatactaaaggactgatcgagttggacgcttcgttggtcaaatctgttgaagaaattcagaaaagtt 36519743  T
Q  341 tgatctgacccaagaactacgaagaga 367  Q
    |||||  ||| | ||||||||||||||    
T  36519744 tgatccaacctaggaactacgaagaga 36519770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 241 - 415
Target Start/End: Original strand, 31470941 - 31471115
Alignment:
Q  241 gtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtt 340  Q
    |||||||||||  ||||  ||||||||||| |||  ||||||||||||||||||||||||||||||||| | |||| || |||||||||||  |||||||    
T  31470941 gtgagaaccatgctctttttctttggtcagcacaacactagaggaccgatcgagttggacgcttcgttgtttagatctgctgaacaaattctgaaaagtt 31471040  T
Q  341 tgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgatc 415  Q
    ||  | |||||| ||||||||||||||| ||||  ||  |||| | |||| |||||||| ||| ||||| |||||    
T  31471041 tgcaccgacccaggaactacgaagagatcagggttctgttggagggaccagatgaagaagttagtttagatgatc 31471115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 237 - 419
Target Start/End: Original strand, 41615131 - 41615313
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    ||||||||||||||| || |   ||||||||||| ||| ||||||| ||||||||||||||||||||| |||||| |||| || |||||||||||   |     
T  41615131 cgacgtgagaaccatgttttctgtctttggtcagcacattactagatgaccgatcgagttggacgctttgttggttagatttgctgaacaaattctggat 41615230  T
Q  337 agtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgatctgtg 419  Q
    ||||||| | | || | || |||||||||||| ||||||||||| ||  ||||| |||||||||||| ||||| |||| ||||    
T  41615231 agtttgaaccggcctaggacctacgaagagatcagggcactccttgaaccaccagatgaagaaattagtttagatgatatgtg 41615313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 260 - 341
Target Start/End: Original strand, 24854687 - 24854768
Alignment:
Q  260 tctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagttt 341  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| || |||||||||||  ||||||||    
T  24854687 tctttggtcagcacagtacaagaggaccgatcgagttggacgcttcgttggttagatctgctgaacaaattctgaaaagttt 24854768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 28335924 - 28335795
Alignment:
Q  21 caagctagttacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcga 120  Q
    |||||||| ||||||||||||||||||||  ||||||  |||||| |||||||||  |||| ||||| ||||||| | | |||| ||| || |||||| |    
T  28335924 caagctagctacagtttactacaacgggggaaaaccaccccatctgttcaggatttccactaatgtcaccctctccgggttgaaaggttagttggatcaa 28335825  T
Q  121 atcaaccgccaactcaactaaagagacaca 150  Q
    |||||||| ||||| |||||  ||||||||    
T  28335824 atcaaccgtcaactaaactactgagacaca 28335795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 149
Target Start/End: Complemental strand, 27950065 - 27949953
Alignment:
Q  37 tactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaactca 136  Q
    |||||||||| ||  ||||||  |||||| || ||||||| ||   ||||| |||| || |||||||||| ||||||||||| ||||||||| |||||||    
T  27950065 tactacaacgagggaaaaccaccccatctgtttaggattcgcaacgatgtcaccctttccgtgctgaaggatcagctggatcaaatcaaccgtcaactca 27949966  T
Q  137 actaaagagacac 149  Q
    |||| ||||||||    
T  27949965 actacagagacac 27949953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 167; Significance: 3e-89; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 21 - 409
Target Start/End: Complemental strand, 28285877 - 28285487
Alignment:
Q  21 caagctagttacagtttactacaacggggag-aaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcg 119  Q
    |||||||| | |||||||||||||||||| | ||||||   ||||| ||||| ||||||||| ||||| |||| |||| | ||||||||||  ||||||     
T  28285877 caagctagctgcagtttactacaacggggggcaaaccacctcatctgttcagaattcacactgatgtcaccctatctgggttgaagggtcaattggatca 28285778  T
Q  120 aatcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccgg 219  Q
    ||| | ||||||||||||||| | |||||||||||||||||||  ||||||||||| || |||||||| ||||||||| ||||||||| |||||||||||    
T  28285777 aattacccgccaactcaactacaaagacacacggagggtggattatgttgagtatcgacgtccatcgaccgactcagcgaggagtgtgtggttcacccgg 28285678  T
Q  220 atgaagcttatgaacggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatg 319  Q
    |||||||| ||||||| ||||||||||||||||||||  |||||||||||||| |||| |||||| ||||||||||||||||||| ||||||||||| ||    
T  28285677 atgaagctcatgaacgacgacgtgagaaccatattctcaatctttggtcagtatagtaatagagggccgatcgagttggacgctttgttggtcagatctg 28285578  T
Q  320 -ttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttag 409  Q
     ||  ||||||| | ||||||||||||   || | ||||||||||||||| ||||||||  |  |||||||||| ||||| ||||||||||    
T  28285577 tttttacaaatttagaaaagtttgatcctgcctaggaactacgaagagatcagggcactattcaacgcaccataggaagacattaatttag 28285487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 21 - 345
Target Start/End: Original strand, 16796002 - 16796329
Alignment:
Q  21 caagctagttacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcga 120  Q
    ||||||||||||||||||||| ||| |||  |||| |  ||||||||||||||||| || | ||||| ||||||| | | |||||| | ||||||||| |    
T  16796002 caagctagttacagtttactataacaggggaaaactatcccatctattcaggattcgcattgatgtcaccctctccgagttgaaggattagctggatcaa 16796101  T
Q  121 atcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccgga 220  Q
    |||||| | ||||||||| | |||||||   |||||||||| ||||||||||||  || |||||| || ||||||||| ||| ||||||||| |  | ||    
T  16796102 atcaactgtcaactcaaccacagagacatgaggagggtggacggtgttgagtattgacgtccatctattgactcagcagggactgtgcggttaagtcaga 16796201  T
Q  221 tgaagcttatgaacggcg---acgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagata 317  Q
    ||||||| ||||||| ||   || |||||| ||| |||| |||||||| ||||||| |||| | || | ||||||||||||||||||||||||||||||     
T  16796202 tgaagctcatgaacgacgacaacatgagaaacatgttctcgatctttgctcagtacggtacaaaagcaacgatcgagttggacgcttcgttggtcagatc 16796301  T
Q  318 tgttgaacaaattcataaaagtttgatc 345  Q
    ||||||| ||||||||||||||||||||    
T  16796302 tgttgaagaaattcataaaagtttgatc 16796329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 237 - 366
Target Start/End: Complemental strand, 41836038 - 41835909
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    ||||||||||||||| ||||   ||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| ||| |||||||||||  |||    
T  41836038 cgacgtgagaaccatgttctctgtctttggtcagcacagtactacaggaccgatcgagttggacgcttcgttggttagaaatgctgaacaaattctgaaa 41835939  T
Q  337 agtttgatctgacccaagaactacgaagag 366  Q
    ||||||  ||| |||| ||| |||||||||    
T  41835938 agtttgcactggcccaggaaatacgaagag 41835909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 240 - 419
Target Start/End: Complemental strand, 11458212 - 11458033
Alignment:
Q  240 cgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagt 339  Q
    |||||||||||| ||||  |||||| |||||| |||||||||||| ||||||||||| ||||||| ||||||||||| ||||||||| |||||  ||| |    
T  11458212 cgtgagaaccatgttctacatcttttgtcagttcagtactagagggccgatcgagttagacgctttgttggtcagatttgttgaacatattcaacaaaat 11458113  T
Q  340 ttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgatctgtg 419  Q
    |||||| | || | |||||| |||||||| ||||| ||  || | |||||| | ||||| |||| ||||| |||||||||    
T  11458112 ttgatccggccaaggaactatgaagagataagggcgctaatgaatgcaccacacgaagacattagtttagatgatctgtg 11458033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 242 - 374
Target Start/End: Original strand, 19330084 - 19330216
Alignment:
Q  242 tgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagttt 341  Q
    |||||||||| ||||| ||||||||| |||||| ||||| |||||||||| ||||||| ||||| ||||||| || | ||||||||||||  ||||||||    
T  19330084 tgagaaccatgttcttaatctttggtaagtacaatactaaaggaccgatcaagttggatgcttcattggtcaaatctattgaacaaattctaaaaagttt 19330183  T
Q  342 gatctgacccaagaactacgaagagattagggc 374  Q
    |||  | |||| |||||||||| ||||||||||    
T  19330184 gattcgtcccatgaactacgaaaagattagggc 19330216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 263 - 374
Target Start/End: Complemental strand, 24832090 - 24831979
Alignment:
Q  263 ttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaactacga 362  Q
    |||||||| ||||||| ||||||| ||||||||||||| |||||||||| |||| || |||||||||||  |||||||||  | |  ||| |||||||||    
T  24832090 ttggtcagcacagtacaagaggactgatcgagttggacacttcgttggttagatttgctgaacaaattctgaaaagtttgcaccggaccaggaactacga 24831991  T
Q  363 agagattagggc 374  Q
    ||||||| ||||    
T  24831990 agagattcgggc 24831979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 260 - 383
Target Start/End: Original strand, 10524 - 10647
Alignment:
Q  260 tctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaacta 359  Q
    ||||||||||  ||| ||| |||||||||||||||||||||| ||||||||| |||| || |||||||||||  |||||||||  | |  ||| ||| ||    
T  10524 tctttggtcaacacaatacaagaggaccgatcgagttggacgtttcgttggttagatctgctgaacaaattctgaaaagtttgcaccggaccaggaaata 10623  T
Q  360 cgaagagattagggcactcctgga 383  Q
    |||||||||| |||| || |||||    
T  10624 cgaagagattcgggctctgctgga 10647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 14194300 - 14194125
Alignment:
Q  21 caagctagttacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcga 120  Q
    |||||||||| ||||||||||||||||||  ||||||  |||||| ||||||||||||||| |||||    | |  | | |||| | |||  |||||| |    
T  14194300 caagctagttgcagtttactacaacgggggaaaaccaccccatctgttcaggattcacactgatgtcaatattttcgggttgaaagatcatatggatcaa 14194201  T
Q  121 atcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcag 196  Q
    |||||||||||||||||| | | ||||| | | | |||||| ||||||||||||| |  |||||||| ||||||||    
T  14194200 atcaaccgccaactcaaccacatagacataagaaaggtggacggtgttgagtatcgaagtccatcgaccgactcag 14194125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 12191522 - 12191373
Alignment:
Q  21 caagctagttacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcga 120  Q
    |||||||| | |||||||||||||  |||| |||||| | ||| | |||||||||| |||| ||||| || |||| | | | || | ||||||||||| |    
T  12191522 caagctagctgcagtttactacaataggga-aaaccacttcatatgttcaggattcgcactgatgtcaccttctccgggttaaatgatcagctggatcaa 12191424  T
Q  121 atcaaccgccaactcaactaaagagacacacggagggtggatggtgttgag 171  Q
    |||||||| ||| ||||| | | ||||||| |||||||||| |||||||||    
T  12191423 atcaaccgtcaattcaaccacaaagacacaaggagggtggacggtgttgag 12191373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 12435950 - 12435801
Alignment:
Q  21 caagctagttacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcga 120  Q
    |||||||| | |||||||||||||  |||| |||||| | ||| | |||||||||| |||| ||||| || |||| | | | || | ||||||||||| |    
T  12435950 caagctagctgcagtttactacaataggga-aaaccacttcatatgttcaggattcgcactgatgtcaccttctccgggttaaatgatcagctggatcaa 12435852  T
Q  121 atcaaccgccaactcaactaaagagacacacggagggtggatggtgttgag 171  Q
    |||||||| ||| ||||| | | ||||||| |||||||||| |||||||||    
T  12435851 atcaaccgtcaattcaaccacaaagacacaaggagggtggacggtgttgag 12435801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 241 - 341
Target Start/End: Original strand, 12573340 - 12573440
Alignment:
Q  241 gtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtt 340  Q
    ||||||| ||| ||||| || |||||||| |||||| ||| || ||| ||||||||||| |||||  ||||||||||| ||||| |  |||| |||||||    
T  12573340 gtgagaatcatgttcttaatatttggtcaatacagttctaaagaaccaatcgagttggatgcttccatggtcagatattttgaagattttcagaaaagtt 12573439  T
Q  341 t 341  Q
    |    
T  12573440 t 12573440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 313
Target Start/End: Complemental strand, 21217858 - 21217790
Alignment:
Q  245 gaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtca 313  Q
    ||||||| |||||||| ||||||||||| ||| ||| |  | ||||||||||||||||||| |||||||    
T  21217858 gaaccatgttcttgatatttggtcagtatagttctaaataatcgatcgagttggacgcttcattggtca 21217790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 21446234 - 21446182
Alignment:
Q  242 tgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgag 294  Q
    |||||||||| |||||||| ||| ||||||||||||||  |||||||||||||    
T  21446234 tgagaaccatgttcttgatatttagtcagtacagtactgaaggaccgatcgag 21446182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 161; Significance: 1e-85; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 35 - 414
Target Start/End: Original strand, 37126504 - 37126885
Alignment:
Q  35 tttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaact 134  Q
    |||||||||||||||| ||||||  |||||| ||||||||||  ||| ||||| ||||||| | | ||||||||||| | |||| |||||| || |||||    
T  37126504 tttactacaacgggga-aaaccaccccatctgttcaggattcgtactgatgtcaccctctccgggttgaagggtcagatagatcaaatcaatcgtcaact 37126602  T
Q  135 caactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatgaac 234  Q
    ||| |  ||||| |||||||||||||||||||||||||||| || || ||||| | ||||| | |||||||||||||||| ||| |||||||| ||||||    
T  37126603 caattgcagagaaacacggagggtggatggtgttgagtatcgacgtctatcgacctactcatccaggagtgtgcggttcagccgaatgaagctcatgaac 37126702  T
Q  235 ggcgac---gtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattc 331  Q
    | ||||   ||||||||||| |||| ||||||| || ||||||||||||||||  ||||||||||||||||||||||||||| || ||||||||||||||    
T  37126703 gacgacgacgtgagaaccattttctcgatctttagttagtacagtactagagggtcgatcgagttggacgcttcgttggtcacatctgttgaacaaattc 37126802  T
Q  332 ataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgat 414  Q
    | |||||||||||  |  ||| ||||||||||||||| || |||||||| ||||||||| | ||||| |||||||||||||||    
T  37126803 agaaaagtttgattcggtccaggaactacgaagagatcagtgcactcctcgacgcaccacacgaagacattaatttagttgat 37126885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 101 - 322
Target Start/End: Complemental strand, 33946326 - 33946102
Alignment:
Q  101 tgaagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaag 200  Q
    |||||||||||||||||| ||||||||||||| ||||||| | ||||||||||||||||||| |||||||||||| |  ||||||||  |||||||   |    
T  33946326 tgaagggtcagctggatcaaatcaaccgccaattcaactacaaagacacacggagggtggatagtgttgagtatcgatgtccatcgactgactcagtcgg 33946227  T
Q  201 gagtgtgcggttcacccggatgaagcttatgaacggcgac---gtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttg 297  Q
    |||||||||||||| |||||||||||| ||||||| ||||   ||||||||||| |||| ||| ||| || | |||| ||||||||  |||||| | |||    
T  33946226 gagtgtgcggttcagccggatgaagctcatgaacgacgacgatgtgagaaccatgttctcgatattttgttactacaatactagagagccgatcaaattg 33946127  T
Q  298 gacgcttcgttggtcagatatgttg 322  Q
    ||||||| ||||||||||| |||||    
T  33946126 gacgcttagttggtcagatttgttg 33946102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 120 - 403
Target Start/End: Original strand, 21483839 - 21484125
Alignment:
Q  120 aatcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccgg 219  Q
    |||||||| | |||||||||| || |||||||  ||||||||||||||| |||||| |  | | |||| ||||||| | || ||||||||||||||||||    
T  21483839 aatcaacctcgaactcaactacagggacacacaaagggtggatggtgttaagtatcgatgttcgtcgaccgactcatccagaagtgtgcggttcacccgg 21483938  T
Q  220 atgaagcttatgaacggcgac---gtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagat 316  Q
    ||||| || ||||||| ||||   ||||||| ||| ||||  |||||| |||||  ||||| ||||||  | |||| |||||||||||||||||||||||    
T  21483939 atgaaactcatgaacgacgacgacgtgagaatcatgttctccatctttagtcagctcagtattagagggacaatcgtgttggacgcttcgttggtcagat 21484038  T
Q  317 atgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaatta 403  Q
     | ||||||| ||||   ||||||||||| |||| | ||||||||||||||| ||||||||  ||||| ||||| | ||||| ||||    
T  21484039 ctattgaacatattcgacaaagtttgatccgaccaaggaactacgaagagatcagggcactaatggacacaccagacgaagatatta 21484125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 101 - 318
Target Start/End: Original strand, 25630613 - 25630833
Alignment:
Q  101 tgaagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaag 200  Q
    ||||||||| |||||||| ||||||| | ||||||||| | |||||| ||||||||||||| |||||||||||||||  |||||||| || ||||||  |    
T  25630613 tgaagggtcggctggatcaaatcaactgtcaactcaaccacagagacgcacggagggtggacggtgttgagtatcaatgtccatcgaccggctcagccgg 25630712  T
Q  201 gagtgtgcggttcacccggatgaagcttatgaacggcga---cgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttg 297  Q
     ||||||| |||||   |||||||||| || |||| |||   ||||| |||||| |||| |||||||||||||||||||||||||| | || |||| |||    
T  25630713 aagtgtgcagttcagttggatgaagctcataaacgacgacggcgtgataaccatgttctcgatctttggtcagtacagtactagagaatcggtcgaattg 25630812  T
Q  298 gacgcttcgttggtcagatat 318  Q
    |||||||| | ||||||||||    
T  25630813 gacgcttcataggtcagatat 25630833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 32 - 211
Target Start/End: Complemental strand, 2734739 - 2734560
Alignment:
Q  32 cagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgcca 131  Q
    ||||||||||||| |||  |||| ||  |||||| ||||||||||  ||| ||||| |||||||   | |||||||||||||||||| ||||||||| ||    
T  2734739 cagtttactacaatgggtggaaaacataccatctgttcaggattcgtactgatgtcaccctctccaggttgaagggtcagctggatcaaatcaaccgtca 2734640  T
Q  132 actcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggt 211  Q
    ||||||||| |||||||||  ||||||||||||||||||||||| || ||||||||  ||||||||  |||||| |||||    
T  2734639 actcaactacagagacacatagagggtggatggtgttgagtatcgacctccatcgactgactcagccgggagtgcgcggt 2734560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 237 - 415
Target Start/End: Complemental strand, 18964695 - 18964517
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    ||||||||||||||| ||||   ||||||||||| ||||||||||| |||  ||||||||||| |||| |||||| ||||||| |||||||||||  |||    
T  18964695 cgacgtgagaaccatgttctctgtctttggtcagcacagtactagatgactaatcgagttggatgctttgttggttagatatgctgaacaaattcgaaaa 18964596  T
Q  337 agtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgatc 415  Q
    ||||||||| |  ||| ||||||||||||||| ||||| || ||||| | |||| | |||||| ||| ||||| |||||    
T  18964595 agtttgatccggtccaggaactacgaagagatcagggctctactggagggaccagaggaagaagttagtttagatgatc 18964517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 231 - 342
Target Start/End: Original strand, 15112107 - 15112218
Alignment:
Q  231 gaacggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaatt 330  Q
    ||||| ||||||||||||||| ||||   ||||||||||| ||||||| ||| |||||||||||||||||||||||||||| |||| || ||||||||||    
T  15112107 gaacgacgacgtgagaaccatgttctctgtctttggtcagcacagtacaagatgaccgatcgagttggacgcttcgttggttagatctgctgaacaaatt 15112206  T
Q  331 cataaaagtttg 342  Q
    |  |||||||||    
T  15112207 ctgaaaagtttg 15112218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 211 - 368
Target Start/End: Original strand, 5937077 - 5937234
Alignment:
Q  211 ttcacccggatgaagcttatgaacggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttgg 310  Q
    |||| ||||||||| || | ||||  ||||||||||||||| ||||    |||||||||  ||||||||||| |||||||||||||||||||||||||||    
T  5937077 ttcaaccggatgaaactcacgaacaacgacgtgagaaccatgttctctggctttggtcaacacagtactagaagaccgatcgagttggacgcttcgttgg 5937176  T
Q  311 tcagatatgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagat 368  Q
    | |||| || |||||||||||  |||| ||||  | | |||| |||||||||||||||    
T  5937177 ttagatctgctgaacaaattctgaaaattttgcaccggcccaggaactacgaagagat 5937234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 368
Target Start/End: Complemental strand, 34949861 - 34949730
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    |||| |||||||||| ||||   ||||| ||||| ||| |||| ||||||||||||||||||||| ||||||||| |||| || |||||||||||  |||    
T  34949861 cgacatgagaaccatgttctctgtctttcgtcagcacaatactcgaggaccgatcgagttggacgtttcgttggttagatctgctgaacaaattctgaaa 34949762  T
Q  337 agtttgatctgacccaagaactacgaagagat 368  Q
    ||||||  | | |||| |||||||||||||||    
T  34949761 agtttgcaccggcccaggaactacgaagagat 34949730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 342
Target Start/End: Original strand, 5463172 - 5463254
Alignment:
Q  260 tctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttg 342  Q
    ||||||||||| | ||||| |||||||||||||||||||||||||||||||| | || || |||||||||||  |||||||||    
T  5463172 tctttggtcagcagagtacaagaggaccgatcgagttggacgcttcgttggttaaatctgctgaacaaattctgaaaagtttg 5463254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 275 - 419
Target Start/End: Original strand, 35096244 - 35096388
Alignment:
Q  275 gtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggc 374  Q
    |||||| | |||||||||||||  | ||||||||||| |||| | ||||| ||||||| |||||||||||  ||  |||||||||||| ||||| |||||    
T  35096244 gtactaaaagaccgatcgagttttatgcttcgttggttagatctattgaagaaattcagaaaagtttgattcgatacaagaactacgaggagatcagggc 35096343  T
Q  375 actcctggacgcaccatatgaagaaattaatttagttgatctgtg 419  Q
     || || || | |||| | ||| |||||| |||||||||||||||    
T  35096344 tctgctagaggaaccagacgaaaaaattagtttagttgatctgtg 35096388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 238 - 349
Target Start/End: Original strand, 42014863 - 42014973
Alignment:
Q  238 gacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaa 337  Q
    ||||||||||||||  |||  || ||||| ||||||||||||| |||| ||||||||||||||||||| || |||| || ||| ||| ||||||  ||||    
T  42014863 gacgtgagaaccatgatctcaatatttgg-cagtacagtactaaaggatcgatcgagttggacgcttcatttgtcaaatctgtggaataaattctaaaaa 42014961  T
Q  338 gtttgatctgac 349  Q
    ||||||||||||    
T  42014962 gtttgatctgac 42014973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 113 - 195
Target Start/End: Original strand, 42014750 - 42014832
Alignment:
Q  113 tggatcgaatcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactca 195  Q
    |||||| ||||||||| ||||||| | | ||||||||| |||||||||||||||||||||||| |  |||||||||| |||||    
T  42014750 tggatcaaatcaaccgtcaactcacccacagagacacaaggagggtggatggtgttgagtatcgaagtccatcgatcaactca 42014832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 144 - 344
Target Start/End: Complemental strand, 41255571 - 41255369
Alignment:
Q  144 agacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatgaacggc---gac 240  Q
    ||||||| ||||||||||| |||||||||||| || ||||| || |||||||||  | || |||| |||||||| |||||| || ||||||| |   ||     
T  41255571 agacacaaggagggtggatagtgttgagtatcgacgtccattgaccgactcagctggaagagtgcagttcacccagatgaatctcatgaacgacgatgat 41255472  T
Q  241 gtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtt 340  Q
    ||||||    | |||||||| ||| |||| |||| ||||| || |||   | ||||||||| ||| ||||| | |||||||||| ||||||| |||||||    
T  41255471 gtgagactggtgttcttgatatttagtcaatacaatactaaagaaccacccaagttggacgtttcattggtgacatatgttgaagaaattca-aaaagtt 41255373  T
Q  341 tgat 344  Q
    ||||    
T  41255372 tgat 41255369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 292 - 415
Target Start/End: Original strand, 32122259 - 32122382
Alignment:
Q  292 gagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccat 391  Q
    |||||| |||||||  |||| |||| ||||||  ||||||||||||||| |||| |||| |  |||||||||| ||| ||||| || ||| | | ||||     
T  32122259 gagttgcacgcttcactggttagatttgttgatgaaattcataaaagttcgatccgacctagaaactacgaagggatcagggctctgctgaaggaaccag 32122358  T
Q  392 atgaagaaattaatttagttgatc 415  Q
    | |||||||||| |||||||||||    
T  32122359 acgaagaaattagtttagttgatc 32122382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 304
Target Start/End: Complemental strand, 32475534 - 32475467
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgctt 304  Q
    ||||||||||||||| || | ||| ||| || |||||| ||||| |||||||||||||||||||||||    
T  32475534 cgacgtgagaaccatgttatcgatattttgttagtacattactaaaggaccgatcgagttggacgctt 32475467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 5462992 - 5463069
Alignment:
Q  83 atgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtgg 160  Q
    ||||| ||||||| | |||||||| | ||||||||||||| ||||| ||||||||| | | ||||||  |||||||||    
T  5462992 atgtcaccctctccgggctgaaggatgagctggatcgaattaaccgtcaactcaaccacaaagacacgaggagggtgg 5463069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 21 - 390
Target Start/End: Original strand, 1905602 - 1905976
Alignment:
Q  21 caagctagttacagtttactacaacggggagaaaccaa--tccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatc 118  Q
    |||||||| | |||||||||||||||||| |||| | |   |||||||||  ||||||||||| ||||| |||||| || | ||||||||||||||||||    
T  1905602 caagctagctgcagtttactacaacggggggaaaaccacccccatctatttgggattcacactaatgtcaccctctttgggttgaagggtcagctggatc 1905701  T
Q  119 gaatcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccg 218  Q
     |||  ||||||||| |||| | |||||||||||||||||||| ||||||||||||| || ||||| |||||||||||  ||||||||| |||||| ||     
T  1905702 aaatataccgccaacacaaccacagagacacacggagggtggacggtgttgagtatcgacgtccattgatcgactcagtcaggagtgtgtggttcagcca 1905801  T
Q  219 gatgaagcttatgaacg---gcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcaga 315  Q
    ||||||| |  ||||||    | || ||| |||||| |||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||    
T  1905802 gatgaagttcgtgaacgacaacaacatgataaccatgttctcgatctttggtcattacaatactagaggaccgatcgagttggacgcttcgttggtaaga 1905901  T
Q  316 tatgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcacca 390  Q
    | | ||||||||||||| |||| ||||||| |||||| ||||||  ||||||| ||| |||| |||||| |||||    
T  1905902 tcttttgaacaaattcagaaaattttgatccgacccatgaactataaagagatcaggacactgctggacacacca 1905976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 32 - 415
Target Start/End: Complemental strand, 1853899 - 1853513
Alignment:
Q  32 cagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgcca 131  Q
    ||||||||| |||||||   ||||||  |||||| |||||||||| |||| ||||| ||||||  | | ||||| |||||||  ||| |||||||  | |    
T  1853899 cagtttactgcaacgggagaaaaccaccccatctgttcaggattcccactgatgtcaccctcttcgggttgaagagtcagctaaatcaaatcaacatcga 1853800  T
Q  132 actcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatg 231  Q
    ||||||||| |||||||||| ||||||||||||||||||||||| || ||| |||||| |||||||   |||||||||||||| |||||| || || |||    
T  1853799 actcaactacagagacacactgagggtggatggtgttgagtatcgacgtccgtcgatcaactcagccgagagtgtgcggttcagccggatcaaactcatg 1853700  T
Q  232 a---acggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaa 328  Q
    |   ||| ||||||||||||||| ||||  ||||||||||||| || ||||||||| ||||||  ||||||||||||||||||||||| ||| ||||| |    
T  1853699 aacgacgacgacgtgagaaccatgttctccatctttggtcagttcaatactagagggccgatcttgttggacgcttcgttggtcagatctgtggaacata 1853600  T
Q  329 ttcataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgatc 415  Q
    ||||  ||||||||||  | || | ||||||||||||||| |  |||||  || |||||||| |  |||| |||||||||| |||||    
T  1853599 ttcaacaaagtttgattcggccaacgaactacgaagagatcattgcactaatgaacgcaccaaacaaagacattaatttagatgatc 1853513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 60 - 419
Target Start/End: Original strand, 19515925 - 19516295
Alignment:
Q  60 ccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaactcaactaaa-----gagacacacgga 154  Q
    ||||||||| ||||| | |||| ||||| ||||||||  | |||||||||||||  ||| ||||||||  |||||||||| ||     |||||||||  |    
T  19515925 ccatctattaaggatccccactgatgtcaccctctctaggatgaagggtcagcttaatcaaatcaaccttcaactcaactcaactacagagacacacaaa 19516024  T
Q  155 gggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatgaacg---gcgacgtgagaaccat 251  Q
    ||||||||||||||||||||  || |   |||| ||||||||   |||||||||||||||  ||| |||| ||  ||||||   ||||||||||||||||    
T  19516025 gggtggatggtgttgagtattgacgtttgtcgaccgactcagtcgggagtgtgcggttcagtcggttgaaactcgtgaacgacagcgacgtgagaaccat 19516124  T
Q  252 attcttgatctttggtcagtac---agtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctga 348  Q
     |||| |||||||||| ||||    |||||||||||   ||| ||||||||||||||||||||||||| | |||||||||||||  ||||||||||| ||    
T  19516125 gttctcgatctttggttagtagtatagtactagagggttgattgagttggacgcttcgttggtcagatctcttgaacaaattcaacaaagtttgatccga 19516224  T
Q  349 cccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgatctgtg 419  Q
    ||||  |||||||||||||||||||||||  || |||||||| | ||||| |||||||||| |||| ||||    
T  19516225 cccagaaactacgaagagattagggcactaatgtacgcaccacacgaagacattaatttagatgatatgtg 19516295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 237 - 415
Target Start/End: Original strand, 22203441 - 22203619
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    ||||||||||||||| ||||   ||||||||||| ||| |||||||||||||||| ||||||||||||||||||| |||| || |||||||||| | |||    
T  22203441 cgacgtgagaaccatgttctctgtctttggtcagcacaatactagaggaccgatcaagttggacgcttcgttggttagatctgctgaacaaattaaaaaa 22203540  T
Q  337 agtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgatc 415  Q
    ||||||||| | |||| ||||||||||||||| ||||| || ||||| | |||| | |||||| ||| ||||| |||||    
T  22203541 agtttgatccggcccaggaactacgaagagatcagggctctgctggagggaccagaggaagaagttagtttagatgatc 22203619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 241 - 373
Target Start/End: Complemental strand, 1378786 - 1378654
Alignment:
Q  241 gtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtt 340  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| |||| |||| |||| |||||  ||| ||    
T  1378786 gtgagaaccatgttctcgatctttggtcagtacagtactagaggaccaatcaagttggatgcttcgttggttagatttgtttaacatattcaacaaattt 1378687  T
Q  341 tgatctgacccaagaactacgaagagattaggg 373  Q
    ||||| | |||| ||||||||||||||| ||||    
T  1378686 tgatccggcccaggaactacgaagagatcaggg 1378654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 83 - 368
Target Start/End: Complemental strand, 33851590 - 33851302
Alignment:
Q  83 atgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatcc 182  Q
    ||||| ||||||| | |||||||| | ||||||||| ||||||||| ||||||||| | | ||||||  |||||||||  || ||||| |||| | ||||    
T  33851590 atgtcaccctctccgagctgaaggatgagctggatcaaatcaaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatatcc 33851491  T
Q  183 atcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatgaacggcgacg---tgagaaccatattcttgatctttggtcagtacagtact 279  Q
    || |  ||||||||| ||   | | || |||| ||||||||| || | ||||| |||||   || ||||||| ||||   ||||||||||| |||||||     
T  33851490 attgtccgactcagccagatctcttcgcttcatccggatgaaactcaagaacgacgacgacgtgtgaaccatgttctctgtctttggtcagcacagtaca 33851391  T
Q  280 agaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttg-atctgacccaagaactacgaagagat 368  Q
    |||||||||||||||||||||||||||||||| ||||  | |||||||||||  ||||||||| ||| || ||| |||||||||||||||    
T  33851390 agaggaccgatcgagttggacgcttcgttggttagatcggctgaacaaattctgaaaagtttgcatcgga-ccaggaactacgaagagat 33851302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 237 - 374
Target Start/End: Original strand, 15031371 - 15031508
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    ||||||| ||||||| ||||   ||||||||||| ||||||| |||||||||||||||||||||||||||| ||| |||| || |||||||||||  |||    
T  15031371 cgacgtgcgaaccatgttctctgtctttggtcagcacagtacaagaggaccgatcgagttggacgcttcgtcggttagatctgctgaacaaattctgaaa 15031470  T
Q  337 agtttgatctgacccaagaactacgaagagattagggc 374  Q
    ||||||  |||  ||| |||||||||||||||| ||||    
T  15031471 agtttgcactggaccaggaactacgaagagattcgggc 15031508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 237 - 368
Target Start/End: Complemental strand, 110055 - 109924
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    ||||||| ||||||| ||||   ||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| || |||||||||||  |||    
T  110055 cgacgtgcgaaccatgttctctgtctttggtcagcacagtacaagaggaccgatcgagttggacgcttcgttggttagatctgctgaacaaattctgaaa 109956  T
Q  337 agtttgatctgacccaagaactacgaagagat 368  Q
    ||||||  | |  ||| |||||||||||||||    
T  109955 agtttgcaccggaccaggaactacgaagagat 109924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 237 - 368
Target Start/End: Complemental strand, 26793352 - 26793221
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    ||||||| ||||||| ||||   ||||||||||| ||||||| |||||| ||||||||||||||||||||||||| |||| ||||||||||||||  |||    
T  26793352 cgacgtgcgaaccatgttctctgtctttggtcagcacagtacaagaggatcgatcgagttggacgcttcgttggttagatctgttgaacaaattctgaaa 26793253  T
Q  337 agtttgatctgacccaagaactacgaagagat 368  Q
    ||||||  | |  ||| |||||||||||||||    
T  26793252 agtttgcaccggaccaggaactacgaagagat 26793221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 220 - 374
Target Start/End: Complemental strand, 18044036 - 18043882
Alignment:
Q  220 atgaagcttatgaacggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatg 319  Q
    |||||||| | ||||| |||||||| ||||||||||| ||| ||| ||||||||| ||||| ||||||||| |||||| || |||| |||||||| | |     
T  18044036 atgaagctcaggaacgacgacgtgaaaaccatattctcgatattttgtcagtacaatactaaaggaccgattgagttgaactcttctttggtcaggtctt 18043937  T
Q  320 ttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggc 374  Q
    | ||| | ||||| |||||||||||  | ||||||||||||||||| ||||||||    
T  18043936 tcgaagatattcagaaaagtttgattcggcccaagaactacgaagaaattagggc 18043882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 260 - 368
Target Start/End: Original strand, 35583852 - 35583960
Alignment:
Q  260 tctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttg-atctgacccaagaact 358  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||| || |||||||||||  ||||||||| | |||| ||| |||||    
T  35583852 tctttggtcagcacagtactagaggaccgatcgagttggacgcttcgtaggttagatctgctgaacaaattctgaaaagtttgcacctga-ccaggaact 35583950  T
Q  359 acgaagagat 368  Q
    ||||||||||    
T  35583951 acgaagagat 35583960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 211 - 374
Target Start/End: Original strand, 7254131 - 7254297
Alignment:
Q  211 ttcacccggatgaagcttatgaacggcgac---gtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgt 307  Q
    |||| ||||||||| |||| ||||| ||||   ||| ||||||| |||||  ||||||||||| ||||||| ||||||||||||||||||||| ||||||    
T  7254131 ttcaaccggatgaaacttaagaacgacgacaacgtgcgaaccatgttctttgtctttggtcagcacagtacaagaggaccgatcgagttggacacttcgt 7254230  T
Q  308 tggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggc 374  Q
    | || |||| || |||||||||||  |||||||||  | |  ||| |||||||||||||||| ||||    
T  7254231 tagttagatctgctgaacaaattctgaaaagtttgcaccggaccaggaactacgaagagattcgggc 7254297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 260 - 331
Target Start/End: Original strand, 29331066 - 29331137
Alignment:
Q  260 tctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattc 331  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| || |||||||||||    
T  29331066 tctttggtcagcacagtacaagaggaccgatcgagttggacgcttcgttggttagatctgctgaacaaattc 29331137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 232 - 342
Target Start/End: Original strand, 38256273 - 38256383
Alignment:
Q  232 aacggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattc 331  Q
    |||| ||||||| ||||||| ||||   |||| |||||| ||||||| ||||||||||||||||||| |||||||||||| |||| || |||||||||||    
T  38256273 aacgacgacgtgcgaaccatgttctatgtcttcggtcagcacagtacaagaggaccgatcgagttggtcgcttcgttggttagatctgctgaacaaattc 38256372  T
Q  332 ataaaagtttg 342  Q
      |||||||||    
T  38256373 tgaaaagtttg 38256383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 232 - 342
Target Start/End: Original strand, 38263848 - 38263958
Alignment:
Q  232 aacggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattc 331  Q
    |||| ||||||| ||||||| ||||   |||| |||||| ||||||| ||||||||||||||||||| |||||||||||| |||| || |||||||||||    
T  38263848 aacgacgacgtgcgaaccatgttctatgtcttcggtcagcacagtacaagaggaccgatcgagttggtcgcttcgttggttagatctgctgaacaaattc 38263947  T
Q  332 ataaaagtttg 342  Q
      |||||||||    
T  38263948 tgaaaagtttg 38263958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 342
Target Start/End: Complemental strand, 37999992 - 37999887
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    ||||||| ||||||| ||||   ||||||||||| ||||||| |||||||||||||||||| ||||||||||||| |||| ||  ||||||||||  |||    
T  37999992 cgacgtgcgaaccatgttctatgtctttggtcagcacagtacaagaggaccgatcgagttgtacgcttcgttggttagatctgcagaacaaattctgaaa 37999893  T
Q  337 agtttg 342  Q
    ||||||    
T  37999892 agtttg 37999887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 261 - 368
Target Start/End: Original strand, 43748003 - 43748110
Alignment:
Q  261 ctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaactac 360  Q
    |||||||||| ||||||| ||||||||||| ||||||||||||||||||||  ||| || |||||||||||  |||||||||  | |  ||| |||||||    
T  43748003 ctttggtcagcacagtacaagaggaccgattgagttggacgcttcgttggttggatctgctgaacaaattctgaaaagtttgcaccggaccaggaactac 43748102  T
Q  361 gaagagat 368  Q
    ||||||||    
T  43748103 gaagagat 43748110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 344
Target Start/End: Complemental strand, 2670171 - 2670064
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    |||||||||||| || ||||  || |||||||| | || ||||| ||||||||| |||||||||||||| ||||| |||| | ||||| | ||||| |||    
T  2670171 cgacgtgagaacaatgttctcaatatttggtcaatgcattactaaaggaccgattgagttggacgcttcattggtaagatcttttgaagatattcaaaaa 2670072  T
Q  337 agtttgat 344  Q
    ||||||||    
T  2670071 agtttgat 2670064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 33 - 163
Target Start/End: Complemental strand, 1380363 - 1380233
Alignment:
Q  33 agtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaa 132  Q
    |||||||||||||| || |||||||  |||| | |||| ||||| |||| || || ||||||| | | ||||| ||| |||| ||| ||| |||| | ||    
T  1380363 agtttactacaacgaggggaaaccatcccatttgttcaagattcccactgatctcaccctctccgggttgaagagtcggctgaatcaaattaacctcaaa 1380264  T
Q  133 ctcaactaaagagacacacggagggtggatg 163  Q
    |||||||| | ||||||||||||||||||||    
T  1380263 ctcaactacaaagacacacggagggtggatg 1380233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 33 - 163
Target Start/End: Complemental strand, 1386467 - 1386337
Alignment:
Q  33 agtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaa 132  Q
    |||||||||||||| || |||||||  |||| | |||| ||||| |||| || || ||||||| | | ||||| ||| |||| ||| ||| |||| | ||    
T  1386467 agtttactacaacgaggggaaaccatcccatttgttcaagattcccactgatctcaccctctccgggttgaagagtcggctgaatcaaattaacctcaaa 1386368  T
Q  133 ctcaactaaagagacacacggagggtggatg 163  Q
    |||||||| | ||||||||||||||||||||    
T  1386367 ctcaactacaaagacacacggagggtggatg 1386337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 4e-73; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 123 - 409
Target Start/End: Complemental strand, 49606668 - 49606379
Alignment:
Q  123 caaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatg 222  Q
    ||||| ||||||||| || | ||||||||  | |||||||||||||||||||| ||| ||||||| ||||||||   ||||| ||||||||| |||||||    
T  49606668 caaccaccaactcaagtacaaagacacacaaatggtggatggtgttgagtatcgacaaccatcgaccgactcagtcgggagtatgcggttcagccggatg 49606569  T
Q  223 aagcttatgaa---cggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatg 319  Q
    |||||||||||   || ||||||||||||||| |||| |||||||||||| |||| |||||||||  |||||||||||||| ||||||||||||||| ||    
T  49606568 aagcttatgaatgacgacgacgtgagaaccatgttctcgatctttggtcaatacaatactagagggtcgatcgagttggacacttcgttggtcagatctg 49606469  T
Q  320 ttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttag 409  Q
    ||||||||||||| |||||||||||| |||||| | |||| |||||||| ||||||||||| ||||||||| | ||||| ||||||||||    
T  49606468 ttgaacaaattcaaaaaagtttgatccgacccaggtactatgaagagatcagggcactccttgacgcaccacacgaagacattaatttag 49606379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 21 - 390
Target Start/End: Complemental strand, 23186196 - 23185821
Alignment:
Q  21 caagctagttacagtttactacaacggggagaaaccaatcc-atctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcg 119  Q
    ||||||| || |||||||||||||||||| |||||||  || ||||| ||| ||||| | || ||||| | ||||| | | ||||| |||||||| |||     
T  23186196 caagctaattgcagtttactacaacgggg-gaaaccacccccatctaatcatgattcccgctgatgtcacactctccgggttgaagagtcagctgaatca 23186098  T
Q  120 aatcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccgg 219  Q
    |||||||| | |||| ||||| ||||||| || ||||||||||||||||||||||  || ||| || | ||||||||   ||||||||| ||||| || |    
T  23186097 aatcaacctcgaactaaactatagagacagactgagggtggatggtgttgagtattgacgtccgtccaccgactcagttgggagtgtgcagttcagccag 23185998  T
Q  220 atgaagcttatgaacgg------cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtca 313  Q
    ||||||||  ||||||       |||||| |||||||| |||| |||||||| ||||||||||||||||||  |||||||||||||||||||||||||||    
T  23185997 atgaagctcgtgaacgatgacgacgacgttagaaccatgttctcgatctttgatcagtacagtactagagggtcgatcgagttggacgcttcgttggtca 23185898  T
Q  314 gatatgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcacca 390  Q
    ||| ||||||||| |||||  |||||| ||||  ||  | ||| |||  |||||| ||||||||  |||||||||||    
T  23185897 gatctgttgaacatattcaacaaagttcgatccaactaaggaattacagagagatcagggcactaatggacgcacca 23185821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 237 - 366
Target Start/End: Complemental strand, 11649049 - 11648920
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    ||||||||||||||| ||||   ||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| ||| |||||||||||  |||    
T  11649049 cgacgtgagaaccatgttctctgtctttggtcagcacagtactacaggaccgatcgagttggacgcttcgttggttagaaatgctgaacaaattctgaaa 11648950  T
Q  337 agtttgatctgacccaagaactacgaagag 366  Q
    ||||||  ||| |||| ||| |||||||||    
T  11648949 agtttgcactggcccaggaaatacgaagag 11648920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 237 - 368
Target Start/End: Complemental strand, 44109317 - 44109186
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    ||||||| ||||||| ||||   ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||  |||    
T  44109317 cgacgtgcgaaccatgttctctgtctttggtcagcacagtactagaggaccgatcgagttggacgcttcgttggttagatctgctgaacaaattctgaaa 44109218  T
Q  337 agtttg-atctgacccaagaactacgaagagat 368  Q
    |||||| | |||| ||| |||||||||||||||    
T  44109217 agtttgcacctga-ccaggaactacgaagagat 44109186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 237 - 331
Target Start/End: Complemental strand, 53270750 - 53270656
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattc 331  Q
    ||||||||||||||| || ||  ||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  53270750 cgacgtgagaaccatgttatttgtctttggtcagcacagtacaagaggaccgatcgagttggacgcttcgttggttagatatgctgaacaaattc 53270656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 260 - 383
Target Start/End: Original strand, 55610475 - 55610598
Alignment:
Q  260 tctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaacta 359  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| || |||||||||||  |||||||||  | |  ||| ||||||    
T  55610475 tctttggtcagcacagtacaagaggaccgatcgagttggacgcttcgttggttagatctgctgaacaaattctgaaaagtttgcaccgggccaggaacta 55610574  T
Q  360 cgaagagattagggcactcctgga 383  Q
    |||||||||| |||| || |||||    
T  55610575 cgaagagattcgggctctgctgga 55610598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 237 - 374
Target Start/End: Original strand, 52918257 - 52918394
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    |||||||  |||||||||||   ||||||||||| ||||||| |||||||||||||||||||||||||||||||| | || || |||||||||||  |||    
T  52918257 cgacgtgcaaaccatattctctgtctttggtcagcacagtacaagaggaccgatcgagttggacgcttcgttggttatatctgctgaacaaattctgaaa 52918356  T
Q  337 agtttgatctgacccaagaactacgaagagattagggc 374  Q
    ||||||  | |  ||| ||||||||||||||| |||||    
T  52918357 agtttgcaccggaccaggaactacgaagagatcagggc 52918394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 142 - 342
Target Start/End: Original strand, 29551903 - 29552106
Alignment:
Q  142 agagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatgaa---cggcg 238  Q
    ||||||||| ||||||||||||||||||||||||  | ||||| ||  ||||||||  | || |||| |||||  | ||||| ||| |||||   || ||    
T  29551903 agagacacaaggagggtggatggtgttgagtatcttcgtccattgactgactcagccggaagagtgcagttcaatcagatgatgctcatgaatgacgacg 29552002  T
Q  239 acgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaag 338  Q
    ||||||||||||| |||| ||| ||||||||||||||||||| |||| | |||||||||||  |||| ||  |||||| | ||||| ||| ||| |||||    
T  29552003 acgtgagaaccatgttctcgatatttggtcagtacagtactaaaggaacaatcgagttggagtcttcattattcagatttattgaagaaaatcagaaaag 29552102  T
Q  339 tttg 342  Q
    ||||    
T  29552103 tttg 29552106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 238 - 342
Target Start/End: Original strand, 38989469 - 38989573
Alignment:
Q  238 gacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaa 337  Q
    |||||| ||||||| ||||   ||||||||||| ||||||| | |||||||||||||||||||||||||||||| |||| || |||||||||||  ||||    
T  38989469 gacgtgcgaaccatgttctctgtctttggtcagcacagtacaataggaccgatcgagttggacgcttcgttggttagatctgctgaacaaattctgaaaa 38989568  T
Q  338 gtttg 342  Q
    |||||    
T  38989569 gtttg 38989573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 273 - 419
Target Start/End: Original strand, 8909966 - 8910112
Alignment:
Q  273 cagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagg 372  Q
    ||||||||||||  |||||||||||||   ||||||||| | || | ||||||| |||||  ||| ||||||| | || | |||||| |||||||| |||    
T  8909966 cagtactagagggtcgatcgagttggatatttcgttggtaaaatctattgaacatattcaacaaaatttgatccggcctaggaactatgaagagatcagg 8910065  T
Q  373 gcactcctggacgcaccatatgaagaaattaatttagttgatctgtg 419  Q
    |||||  ||||||||||||| ||||| |||| ||||| |||||||||    
T  8910066 gcactaatggacgcaccatacgaagacattagtttagatgatctgtg 8910112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 260 - 374
Target Start/End: Original strand, 40761184 - 40761298
Alignment:
Q  260 tctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaacta 359  Q
    ||||||||||| ||| ||| |||||| ||||||||||||||  ||||||||| |||| || |||||||||||  |||||||||  | || ||| ||||||    
T  40761184 tctttggtcagcacaatacaagaggatcgatcgagttggacttttcgttggttagatttgctgaacaaattctgaaaagtttgcaccgaaccaggaacta 40761283  T
Q  360 cgaagagattagggc 374  Q
    |||||||||| ||||    
T  40761284 cgaagagattcgggc 40761298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 237 - 342
Target Start/End: Original strand, 40691746 - 40691851
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    ||||||| ||||||| ||||   |||||||| || ||||||| |||||||| ||||||||||||||||||||||| ||||||  | |||||||||  |||    
T  40691746 cgacgtgcgaaccatgttctatgtctttggttagcacagtacaagaggaccaatcgagttggacgcttcgttggttagatatacttaacaaattctgaaa 40691845  T
Q  337 agtttg 342  Q
    ||||||    
T  40691846 agtttg 40691851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 131 - 284
Target Start/End: Original strand, 12692517 - 12692674
Alignment:
Q  131 aactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccg---gatgaagct 227  Q
    |||||||||| |||||||||  |||| |||||| |||||||||||||| ||| |||| |||||| |  || |||||||||||||  ||   ||||||| |    
T  12692517 aactcaactacagagacaca--gaggatggatgatgttgagtatcaacgtccgtcgaccgactcggtcagaagtgtgcggttcagacggacgatgaagat 12692614  T
Q  228 tatgaac---ggcgacgtgagaaccatattcttgatctttggtcagtacagtactagagg 284  Q
     ||||||   | || |||||||||||| |||| |||||||||||||||||||||| ||||    
T  12692615 catgaacgaagacggcgtgagaaccatgttctcgatctttggtcagtacagtacttgagg 12692674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 415
Target Start/End: Original strand, 7631070 - 7631185
Alignment:
Q  300 cgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaa 399  Q
    |||||| || ||||||||||||||| ||||||| ||||||||| || ||| ||| ||||| ||||||||||| || || ||  | | |||||| ||||||    
T  7631070 cgcttcttttgtcagatatgttgaagaaattcagaaaagtttgttccgactcaaaaactatgaagagattagagctctactaaaggaaccatacgaagaa 7631169  T
Q  400 attaatttagttgatc 415  Q
     ||||||||| |||||    
T  7631170 gttaatttagctgatc 7631185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 418
Target Start/End: Original strand, 34952651 - 34952742
Alignment:
Q  327 aattcataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgatctgt 418  Q
    |||||| |||||||||||| | | ||  |||||| ||||||| ||||||||| | || |||||||||||||| ||||||||| |||||||||    
T  34952651 aattcaaaaaagtttgatccggctcagaaactacaaagagatcagggcactcatagatgcaccatatgaagatattaatttaattgatctgt 34952742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 237 - 383
Target Start/End: Original strand, 6369415 - 6369561
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    |||||||||||| || ||||  || ||||| ||||||| ||||| || || || ||||||| ||| ||| |||||||||| |||||||  |||||| |||    
T  6369415 cgacgtgagaactatgttctccatatttgggcagtacaatactaaagaactgaccgagttgaacgtttcattggtcagatctgttgaattaattcagaaa 6369514  T
Q  337 agtttgatctgacccaagaactacgaagagattagggcactcctgga 383  Q
    ||||||||| | || |  ||| ||||||||| |||||| || |||||    
T  6369515 agtttgatccggcctataaacaacgaagagactagggctctgctgga 6369561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 282 - 371
Target Start/End: Original strand, 45658276 - 45658366
Alignment:
Q  282 aggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaa-ttcataaaagtttgatctgacccaagaactacgaagagattag 371  Q
    |||||||||||||||||||||||||||||| |||| || |||||||| |||  |||||||||  | || ||| |||||||||||| |||||    
T  45658276 aggaccgatcgagttggacgcttcgttggttagatctgctgaacaaatttctgaaaagtttgcaccgaaccaggaactacgaagaaattag 45658366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 347
Target Start/End: Original strand, 37397025 - 37397130
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    |||| |||||||||| |||||||| |||||| |||||     || |||| | ||| ||||||||||||| ||||| | |||||||||| ||||||| |||    
T  37397025 cgacctgagaaccatgttcttgatatttggttagtac-----taaaggatcaatcaagttggacgcttctttggttaaatatgttgaagaaattcagaaa 37397119  T
Q  337 agtttgatctg 347  Q
    |||||| ||||    
T  37397120 agtttgttctg 37397130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 414
Target Start/End: Original strand, 12692685 - 12692745
Alignment:
Q  354 gaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgat 414  Q
    ||||||||||||||| ||||||||  |||| |||||| | ||||| |||||||||| ||||    
T  12692685 gaactacgaagagatcagggcactaatggatgcaccacacgaagacattaatttagatgat 12692745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 6e-69; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 21 - 344
Target Start/End: Original strand, 51327448 - 51327773
Alignment:
Q  21 caagctagttacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcga 120  Q
    |||||||| | | ||||||||||||||||| ||||||  |||| | |||||||||  || | ||||| ||||||| | | ||||| |||||||| ||| |    
T  51327448 caagctagctgcggtttactacaacgggga-aaaccatcccatatgttcaggatttgcaatgatgtcaccctctccgggttgaagagtcagctgaatcaa 51327546  T
Q  121 atcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccgga 220  Q
    ||||||| | |||||||||| |||||||||| || | ||||||||||| |||||| || ||| |||| ||||||| | ||||||||||||||||||||||    
T  51327547 atcaacctcaaactcaactacagagacacacagatgatggatggtgttaagtatcgacgtccttcgaccgactcatccaggagtgtgcggttcacccgga 51327646  T
Q  221 tgaagcttatgaacggcgacg---tgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagata 317  Q
    ||||||| ||||||| |||||   |||||||||| ||||  |||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||    
T  51327647 tgaagctcatgaacgacgacgacttgagaaccatgttctccatctttggtcagtttagtactagaggtccgatcgagttggacgcttcgttggtcagata 51327746  T
Q  318 tgttgaacaaattcataaaagtttgat 344  Q
    ||||||||| ||||   ||||||||||    
T  51327747 tgttgaacatattcgacaaagtttgat 51327773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 21 - 344
Target Start/End: Original strand, 10493326 - 10493648
Alignment:
Q  21 caagctagttacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcga 120  Q
    |||||||||| |||||||||| |||| ||  ||| |||   |||| || ||||||| |||| ||||| | |||| || | ||||| |||||||| ||| |    
T  10493326 caagctagttgcagtttactataacgagggaaaatcaactaatctgtttaggattcccactgatgtcacactctttgggttgaagagtcagctgaatcaa 10493425  T
Q  121 atcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccgga 220  Q
    ||||||| | |||||||||| |||||||||||| ||||||||||||||||||||| || ||| |||| |||||||    | ||||||||||||||||| |    
T  10493426 atcaacctcgaactcaactacagagacacacggtgggtggatggtgttgagtatcgacgtccgtcgaccgactcattg-gaagtgtgcggttcacccgaa 10493524  T
Q  221 tgaagcttatgaacggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgt 320  Q
    |||| |  ||||||| ||| ||||||||||| |||| ||||||||||| ||||||||||||||| ||||| ||||||  ||||||||||||||||| |||    
T  10493525 tgaatcccatgaacgacgatgtgagaaccatgttctcgatctttggtctgtacagtactagagggccgattgagttgcgcgcttcgttggtcagatctgt 10493624  T
Q  321 tgaacaaattcataaaagtttgat 344  Q
    |||||| |||||  ||||||||||    
T  10493625 tgaacatattcaacaaagtttgat 10493648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 21 - 419
Target Start/End: Complemental strand, 12719100 - 12718699
Alignment:
Q  21 caagctagttacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcga 120  Q
    |||||||||| ||||| |||||||||||| |||||||  |||||| ||||||| || |||| || || ||||||| | | |||||||||||||  ||| |    
T  12719100 caagctagttgcagttaactacaacggggggaaaccaccccatctgttcaggaatcccactgatatcaccctctccgggttgaagggtcagctaaatcaa 12719001  T
Q  121 atcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccgga 220  Q
    ||||||| | |||||||||| |||||||| | || |||||||||| ||||||||| || ||  ||||||||||| |   ||||||||||||||| | |||    
T  12719000 atcaacctcgaactcaactacagagacacgcagatggtggatggtattgagtatcgacgtctgtcgatcgactctgtcgggagtgtgcggttcatctgga 12718901  T
Q  221 tgaagcttatgaac---ggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagata 317  Q
    ||||||| ||||||   |  || ||||||||||| ||||  ||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||     
T  12718900 tgaagctcatgaacgaggaggatgtgagaaccatgttctcaatctttggtcagtacagtattagagggccgatcgagttggacgcttcgttggtaagatc 12718801  T
Q  318 tgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgatctg 417  Q
     |||||||| |||||  ||||| |||||   ||||  ||||| |||||||| |||  |||  |||| | |||| | ||||| |||||||||| |||| ||    
T  12718800 cgttgaacatattcaacaaagtatgatccagcccagaaactatgaagagatcaggaaactaatggatgaaccacacgaagacattaatttagatgatttg 12718701  T
Q  418 tg 419  Q
    ||    
T  12718700 tg 12718699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 21 - 390
Target Start/End: Original strand, 25213241 - 25213616
Alignment:
Q  21 caagctagttacagtttactacaacg-gggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcg 119  Q
    |||||||| | ||||||| | ||||| ||| |||||||  |||| | |||||||||| |||  ||||| ||||||| | |||||||||||||||  |||     
T  25213241 caagctagctgcagtttaattcaacgtgggggaaaccaccccatatgttcaggattcgcacggatgtcaccctctccgggctgaagggtcagctaaatca 25213340  T
Q  120 aatcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccgg 219  Q
    |||||||| |||||||||| | | |||||||||||||||| | | ||||||||||| |  |||||||| ||||||| |  | ||||||  ||||| ||||    
T  25213341 aatcaaccaccaactcaaccacatagacacacggagggtgaacgttgttgagtatcgatgtccatcgaccgactcatctggaagtgtgttgttcagccgg 25213440  T
Q  220 atgaagcttatgaacggcgacg----tgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcaga 315  Q
    |||||||| ||||| |  ||||    |||||||||| ||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25213441 atgaagctcatgaaagaagacgatgttgagaaccatgttctctatctttggttagtacagtactagaggaccgatcgagttggacgcttcgttggtcaga 25213540  T
Q  316 tatgttgaacaaattcataaaagt-ttgatctgacccaagaactacgaagagattagggcactcctggacgcacca 390  Q
    | ||||||  ||||||| ||||   |||||  | ||||| |||||||||||||| |||||||| || |||||||||    
T  25213541 tctgttgaggaaattcaaaaaaaaattgattcgtcccaaaaactacgaagagatcagggcacttcttgacgcacca 25213616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 24628829 - 24629031
Alignment:
Q  21 caagctagttacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcga 120  Q
    |||||||||| ||||||||||||||||||  ||| ||  |||||| ||||||||||||| | ||||| ||||||  | | ||||| |||||||| ||| |    
T  24628829 caagctagttgcagtttactacaacgggggaaaatcac-ccatctgttcaggattcacaatgatgtcaccctcttcgggttgaagagtcagctgaatcaa 24628927  T
Q  121 atcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccgga 220  Q
    ||||||| | |||||||||| ||||||||||| |||||||||||||||||||||| || ||| |||||||||||||| |||||||||||||||||| |||    
T  24628928 atcaacctcaaactcaactacagagacacacgaagggtggatggtgttgagtatcgacgtccgtcgatcgactcagccaggagtgtgcggttcacctgga 24629027  T
Q  221 tgaa 224  Q
    ||||    
T  24629028 tgaa 24629031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 60 - 316
Target Start/End: Complemental strand, 27025318 - 27025059
Alignment:
Q  60 ccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtg 159  Q
    |||||| |||||||||| |||| ||||| ||||||||| | |||| | |||  |||||  |||| ||  |||||||||||| |||||||||| ||| |||    
T  27025318 ccatctgttcaggattcgcactgatgtcaccctctctgggttgaaagctcaaatggattaaatctacatccaactcaactacagagacacacagagagtg 27025219  T
Q  160 gatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatga---acggcgacgtgagaaccatattct 256  Q
     ||||||||||||||| || || ||||| ||||||||  || |||||||||||||  ||||||||||| ||||   ||| ||||||||||||||| ||||    
T  27025218 tatggtgttgagtatcgacgtctatcgaccgactcagttagaagtgtgcggttcagtcggatgaagctcatgaacgacgacgacgtgagaaccatgttct 27025119  T
Q  257 tgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagat 316  Q
     ||||||| ||||||| ||||| |||||  | ||| ||||||| ||||||||||||||||    
T  27025118 cgatcttttgtcagtatagtacaagagggacaatcaagttggatgcttcgttggtcagat 27025059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 60 - 321
Target Start/End: Complemental strand, 27036559 - 27036295
Alignment:
Q  60 ccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtg 159  Q
    |||||| |||||||||  |||| ||||| ||||||| | | |||| | |||  |||||  |||| ||  |||||||||||| |||||||||||||| |||    
T  27036559 ccatctgttcaggatttgcactgatgtcaccctctccgggttgaaagctcaaatggattaaatctacatccaactcaactacagagacacacggagagtg 27036460  T
Q  160 gatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatga---acggcgacgtgagaaccatattct 256  Q
     |||||||||||||||  | || ||||| ||||||||   | |||||||||||||  ||||||||||| ||||   ||| ||||||||||||||| ||||    
T  27036459 tatggtgttgagtatcggcgtctatcgaccgactcagttggaagtgtgcggttcagtcggatgaagctcatgaacgacgacgacgtgagaaccatgttct 27036360  T
Q  257 tgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgtt 321  Q
     ||||||| ||||||| ||||| |||||  | ||| |||||||||||||||||||||||| ||||    
T  27036359 cgatcttttgtcagtatagtacaagagggacaatcaagttggacgcttcgttggtcagatctgtt 27036295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 83 - 374
Target Start/End: Original strand, 21449271 - 21449562
Alignment:
Q  83 atgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatcc 182  Q
    ||||| ||||||||| |||||||| | || |||||| ||||||||| ||||||||| | | ||||||  |||||||||  || ||||| |||| |  |||    
T  21449271 atgtcaccctctctgagctgaaggatgagatggatcaaatcaaccgacaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtcc 21449370  T
Q  183 atcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatgaacggcgacgtgagaaccatattcttgatctttggtcagtacagtactaga 282  Q
    || |  |||||||||  |   | | || |||| ||||||||| || | ||||| ||||||| ||||||| ||||   ||||||||||| ||||||| |||    
T  21449371 attgtccgactcagccggatctcttcgcttcagccggatgaaactcaagaacgacgacgtgcgaaccatgttctctttctttggtcagcacagtacaaga 21449470  T
Q  283 ggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggc 374  Q
     |||||||||||||||||| ||||||||| |||||||||||||||||||  |||||||||  | |  ||| |||||||||||||||| ||||    
T  21449471 tgaccgatcgagttggacgtttcgttggttagatatgttgaacaaattccgaaaagtttgcaccggaccaggaactacgaagagattcgggc 21449562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 83 - 383
Target Start/End: Complemental strand, 9332048 - 9331745
Alignment:
Q  83 atgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatcc 182  Q
    ||||| ||||||| | ||||||||  |||||||||| ||||||||| ||||||||||| ||||||||  |||||||||  |||||||| |||| |  |||    
T  9332048 atgtcaccctctccgggctgaaggaccagctggatcaaatcaaccgtcaactcaactacagagacacgaggagggtggtcggtgttgaatatcgatgtcc 9331949  T
Q  183 atcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatgaacggcgacg---tgagaaccatattcttgatctttggtcagtacagtact 279  Q
    || |  |||||||||  |     | ||| ||| ||||||||| || |  ||||  ||||   ||| |||||  ||||   ||||||||||| ||| ||||    
T  9331948 attgtccgactcagccggatcacttcggctcaaccggatgaaactcacaaacgatgacgacatgataaccacgttctctgtctttggtcagcacaatact 9331849  T
Q  280 agaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggcactcc 379  Q
    | ||||| |||||||||||| ||||||||||| || ||||||||||||||||  |||||||||||| | |||| ||||||| | ||||| |||||||| |    
T  9331848 aaaggactgatcgagttggatgcttcgttggttaggtatgttgaacaaattctaaaaagtttgatccggcccaggaactacaaggagatcagggcactac 9331749  T
Q  380 tgga 383  Q
    ||||    
T  9331748 tgga 9331745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 237 - 374
Target Start/End: Complemental strand, 18877396 - 18877259
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    |||||| |||||||| ||||   ||||||||||| ||| |||||||||||||||||||||||||||||| | ||| |||| || |||||||||||  |||    
T  18877396 cgacgtcagaaccatgttctctgtctttggtcagcacaatactagaggaccgatcgagttggacgcttcataggttagatctgctgaacaaattctgaaa 18877297  T
Q  337 agtttgatctgacccaagaactacgaagagattagggc 374  Q
    ||||||  ||| |||| ||||||||||||||| |||||    
T  18877296 agtttgcactggcccaggaactacgaagagatcagggc 18877259  T

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Target: chr3; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 237 - 368
Target Start/End: Original strand, 21978656 - 21978787
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    ||||||||||||||| ||||   |||||| |||| ||| ||||||| || ||||||||||||||||||||||||| |||| || |||||||||||  |||    
T  21978656 cgacgtgagaaccatgttctctgtctttgttcagcacaatactagaagatcgatcgagttggacgcttcgttggttagatctgctgaacaaattctgaaa 21978755  T
Q  337 agtttgatctgacccaagaactacgaagagat 368  Q
    ||||||  ||| |||| |||||||||||||||    
T  21978756 agtttgcactggcccaggaactacgaagagat 21978787  T

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Target: chr3; HSP #12
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 237 - 368
Target Start/End: Original strand, 22001087 - 22001218
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    ||||||||||||||| ||||   |||||| |||| ||| ||||||| || ||||||||||||||||||||||||| |||| || |||||||||||  |||    
T  22001087 cgacgtgagaaccatgttctctgtctttgttcagcacaatactagaagatcgatcgagttggacgcttcgttggttagatctgctgaacaaattctgaaa 22001186  T
Q  337 agtttgatctgacccaagaactacgaagagat 368  Q
    ||||||  ||| |||| |||||||||||||||    
T  22001187 agtttgcactggcccaggaactacgaagagat 22001218  T

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Target: chr3; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 245 - 342
Target Start/End: Original strand, 8485201 - 8485298
Alignment:
Q  245 gaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttg 342  Q
    ||||||| |||||  ||||||||||| ||||||| |||||||| ||| ||||||||||||||||||| |||| ||||||||||||||  |||||||||    
T  8485201 gaaccatgttctttgtctttggtcagcacagtacaagaggaccaatcaagttggacgcttcgttggttagatctgttgaacaaattctgaaaagtttg 8485298  T

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Target: chr3; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 342
Target Start/End: Original strand, 3940215 - 3940320
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    ||||||| ||||||| ||||   ||||||||||| ||||||| |||||||||||||||||||| |||||||| || |||| || |||||||||||  |||    
T  3940215 cgacgtgcgaaccatgttctctgtctttggtcagcacagtacaagaggaccgatcgagttggatgcttcgtttgttagatctgctgaacaaattctgaaa 3940314  T
Q  337 agtttg 342  Q
    ||||||    
T  3940315 agtttg 3940320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 239 - 368
Target Start/End: Original strand, 44206479 - 44206608
Alignment:
Q  239 acgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaag 338  Q
    ||||| ||||||| ||||   ||||||||||| | ||||| ||||||||||||||||||||||||| |||||| |||| || |||||||||||  |||||    
T  44206479 acgtgcgaaccatgttctctgtctttggtcagcatagtacaagaggaccgatcgagttggacgctttgttggttagatctgctgaacaaattctgaaaag 44206578  T
Q  339 tttgatctgacccaagaactacgaagagat 368  Q
    ||||  | |  ||| |||||||||||||||    
T  44206579 tttgcaccggaccaggaactacgaagagat 44206608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 342
Target Start/End: Original strand, 47373535 - 47373640
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    ||||||| ||||||| ||||   ||||||||||| ||||||| |||||||||||||||||||||||||||| ||| |||| || |||| ||||||  |||    
T  47373535 cgacgtgcgaaccatgttctctgtctttggtcagcacagtacaagaggaccgatcgagttggacgcttcgtgggttagatctgctgaaaaaattctgaaa 47373634  T
Q  337 agtttg 342  Q
    ||||||    
T  47373635 agtttg 47373640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 32 - 175
Target Start/End: Original strand, 23333481 - 23333624
Alignment:
Q  32 cagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgcca 131  Q
    ||||||||||||||||||||||||||  |||| | ||| |||| | |||| ||||| ||||||||  | ||||| || ||||| ||| ||| |||| | |    
T  23333481 cagtttactacaacggggagaaaccaccccatttgttcgggatgcccactgatgtcaccctctctaggttgaagagtgagctgaatcaaattaacctcga 23333580  T
Q  132 actcaactaaagagacacacggagggtggatggtgttgagtatc 175  Q
    ||||||||| | ||| ||  ||||||||||||||||||||||||    
T  23333581 actcaactacaaagatacgtggagggtggatggtgttgagtatc 23333624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 383
Target Start/End: Original strand, 41973433 - 41973542
Alignment:
Q  274 agtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattaggg 373  Q
    ||||| |||||||||||||||||||| ||||||||||| |||| || |||||||||||  |||| ||||  | |  ||| |||||||||||||||| |||    
T  41973433 agtacaagaggaccgatcgagttggaagcttcgttggttagatctgctgaacaaattctgaaaattttgcaccggaccaggaactacgaagagattcggg 41973532  T
Q  374 cactcctgga 383  Q
    | || |||||    
T  41973533 ctctgctgga 41973542  T

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Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 318
Target Start/End: Original strand, 51135472 - 51135550
Alignment:
Q  240 cgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatat 318  Q
    |||||||||||| ||||||||  |||||||||||||| ||| |||||| |||||||||||| ||||  |||| ||||||    
T  51135472 cgtgagaaccatgttcttgatagttggtcagtacagttctaaaggaccaatcgagttggacacttccctggttagatat 51135550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 280 - 368
Target Start/End: Complemental strand, 48063546 - 48063458
Alignment:
Q  280 agaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttg-atctgacccaagaactacgaagagat 368  Q
    |||||||||||| ||||||||||||||||||| |||| || |||| ||||||  ||||||||| ||| || ||| |||||||||||||||    
T  48063546 agaggaccgatcaagttggacgcttcgttggttagatctgctgaaaaaattctgaaaagtttgcatcgga-ccaggaactacgaagagat 48063458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 232 - 368
Target Start/End: Original strand, 49326077 - 49326213
Alignment:
Q  232 aacggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattc 331  Q
    |||| ||||||| ||||||| ||||   |||||||| || ||||||| |||||| |||||||| |||||| ||||||||| | || || |||||||||||    
T  49326077 aacgacgacgtgcgaaccatgttctctgtctttggttagcacagtacaagaggatcgatcgagctggacgtttcgttggttatatctgctgaacaaattc 49326176  T
Q  332 ataaaagtttgatctgacccaagaactacgaagagat 368  Q
       ||||||||  | |  ||| |||||||||||||||    
T  49326177 tggaaagtttgcaccggaccaggaactacgaagagat 49326213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 23333638 - 23333709
Alignment:
Q  201 gagtgtgcggttcacccggatgaagcttatgaacggcgacg---tgagaaccatattcttgatctttggtca 269  Q
    |||||||||||||| || ||||||||| ||||||| |||||   | |||||||| |||| ||||||||||||    
T  23333638 gagtgtgcggttcagccagatgaagctcatgaacgacgacgacattagaaccatgttctcgatctttggtca 23333709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 4812130 - 4812186
Alignment:
Q  132 actcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgat 188  Q
    ||||||| | ||||||||| ||||| |||| ||||||| ||||| ||||||||||||    
T  4812130 actcaaccacagagacacaaggaggatggagggtgttgggtatcgacatccatcgat 4812186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 175
Target Start/End: Original strand, 41973239 - 41973331
Alignment:
Q  83 atgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatc 175  Q
    ||||||||||||| | | |||||| | ||||||||| ||||||||| ||||||||| | | |||||   ||||||||| ||| ||||| ||||    
T  41973239 atgtcgccctctccgggttgaaggatgagctggatcaaatcaaccgtcaactcaaccacaaagacatgaggagggtggttggagttgaatatc 41973331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 33 - 370
Target Start/End: Original strand, 425849 - 426189
Alignment:
Q  33 agtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaa 132  Q
    |||||| ||||||||||  ||||||  |||||| |||||||||| |||| ||||| ||||||| | | |||||||||||||  ||| |||| ||| | ||    
T  425849 agtttaatacaacgggggaaaaccaccccatctgttcaggattcccactgatgtcaccctctccgggttgaagggtcagctaaatcaaatccacctcgaa 425948  T
Q  133 ctcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatga 232  Q
    ||||| || | |||||||| ||||||||||||||||||||||| || ||| ||||| |||||||   ||||||||||||||| |||||||||||| ||||    
T  425949 ctcaaatacaaagacacacagagggtggatggtgttgagtatcgacgtccgtcgattgactcagtcgggagtgtgcggttcagccggatgaagctcatga 426048  T
Q  233 ac---ggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaat 329  Q
    ||   | ||| || |||||||| |||| |||||||||| |||| |||||| ||||  |||||||||||||  ||||||||||||||| ||||||||| ||    
T  426049 acgatgacgaagttagaaccatgttctcgatctttggttagtaaagtactggagggtcgatcgagttggattcttcgttggtcagatttgttgaacatat 426148  T
Q  330 tcataaaagtttgatctgacccaagaactacgaagagatta 370  Q
    |||  ||||||||||| | ||||||||||||||||| ||||    
T  426149 tcaacaaagtttgatccggcccaagaactacgaagacatta 426189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 2e-62; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 60 - 408
Target Start/End: Complemental strand, 34550682 - 34550331
Alignment:
Q  60 ccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtg 159  Q
    |||| ||||||||||||||| | ||||   |||||  | | |||||||||||||| ||| ||||||||| ||| ||||| | | ||||||||||||| ||    
T  34550682 ccatttattcaggattcacattgatgttatcctctacgggttgaagggtcagctgcatcaaatcaaccgacaagtcaacaacatagacacacggaggttg 34550583  T
Q  160 gatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatgaacggcgacg---tgagaaccatattct 256  Q
    || ||||||||||||| ||  |||| |  |||||||||  ||||||||||||| | ||||||||| || ||||||| |||||   |||||||||| ||||    
T  34550582 gacggtgttgagtatcgacgcccattgtccgactcagcccggagtgtgcggtttagccggatgaatctcatgaacgacgacgatgtgagaaccatgttct 34550483  T
Q  257 tgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaa 356  Q
      |||||||| || |||| |||||||||| | ||||||||||||||||||||||||| || ||||||||||||||| ||||||| ||||   |||| |||    
T  34550482 caatctttggccaatacaatactagaggatcaatcgagttggacgcttcgttggtcaaatttgttgaacaaattcaaaaaagttcgatcctgcccaggaa 34550383  T
Q  357 ctacgaagagattagggcactcctggacgcaccatatgaagaaattaattta 408  Q
    |||||||||||| ||||||||||||||||| ||| | ||| | |||||||||    
T  34550382 ctacgaagagatcagggcactcctggacgccccacacgaatacattaattta 34550331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 144 - 419
Target Start/End: Original strand, 28638796 - 28639074
Alignment:
Q  144 agacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatgaac---ggcgac 240  Q
    ||||||| ||||||||||||||||| |||||  || | ||| || |||||||||  | | |||| |||||| ||| ||||| ||   ||||   | ||||    
T  28638796 agacacaaggagggtggatggtgttcagtattgacgtacattgaccgactcagccggaactgtgtggttcagccgaatgaatctcgggaacaatgacgac 28638895  T
Q  241 gtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtt 340  Q
    |||| |||||| |  |||||||||||  |||||||||||| |||||| ||||| ||||||||||||||||||| || ||||||| |||||||||||| ||    
T  28638896 gtgaaaaccatctcattgatctttggcaagtacagtactaaaggaccaatcgatttggacgcttcgttggtcatatgtgttgaagaaattcataaaaatt 28638995  T
Q  341 tgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgatctgtg 419  Q
    ||||||| | |||||||||||||||||| ||||| || |||||||||||| | ||||| |||| ||||| |||||||||    
T  28638996 tgatctggcacaagaactacgaagagatcagggctctgctggacgcaccagacgaagacattagtttagctgatctgtg 28639074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 35 - 424
Target Start/End: Original strand, 48181122 - 48181514
Alignment:
Q  35 tttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaact 134  Q
    |||||||||||||||| ||||||  |||| | |||| ||||  |||| |||||   ||||||  | |||||| |||| |||||| |||| |||| |||||    
T  48181122 tttactacaacggggaaaaaccaccccatttgttcaagatttgcactgatgtcatgctctctaggttgaaggatcagttggatcaaatctaccgtcaact 48181221  T
Q  135 caactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatgaac 234  Q
    |||| |   ||||| | |||| | ||||| ||||||||||  |  | |||| |  |||||||| ||||  ||| ||||||   |||||||||||| ||||    
T  48181222 caacaacgaagacataaggagaggggatgatgttgagtattgaggttcatcaacagactcagccaggaccgtgtggttcaattggatgaagcttaggaac 48181321  T
Q  235 ggcga---cgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattc 331  Q
    | |||   ||| |||||||| |||| ||| |||||| |||||| ||||| |||| ||||||||||||||||| || | ||||||| | ||||| ||||||    
T  48181322 gccgatgacgtaagaaccatgttctcgatatttggttagtacaatactaaaggatcgatcgagttggacgctacggttgtcagatttattgaagaaattc 48181421  T
Q  332 ataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgatctgtggtatg 424  Q
    | ||||||||||||||||||| ||| ||||||||||| ||||| || ||| | | |||| | |||||||||| ||||| |||| |||| ||||    
T  48181422 agaaaagtttgatctgacccatgaattacgaagagatcagggctctgctgaatgaaccagacgaagaaattagtttagctgatatgtgatatg 48181514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 60 - 419
Target Start/End: Original strand, 7563148 - 7563510
Alignment:
Q  60 ccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtg 159  Q
    |||||| || ||||||||||   ||||| ||||||| | |||||||| | ||||||||| ||||||||| ||||||||| | ||||||||  ||||||||    
T  7563148 ccatctgtttaggattcacaacgatgtcaccctctccgggctgaaggatgagctggatcaaatcaaccgtcaactcaaccacagagacacgaggagggtg 7563247  T
Q  160 gatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatgaac---ggcgacgtgagaaccatattct 256  Q
    |  |||||||| |||| |  ||||| |  ||||||||   |   | | || |||| ||||||||| || | ||||   | ||||| ||||||||| ||||    
T  7563248 gtcggtgttgaatatcgatgtccattgtccgactcagtcggatctcttcgcttcagccggatgaaactcacgaaccaagacgacgcgagaaccatgttct 7563347  T
Q  257 tgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaa 356  Q
       ||||||||||  ||| || ||||||||||||||||||||||| ||||||||| |||| || ||||||||||    | ||||||| | |||||| ||     
T  7563348 ctgtctttggtcaacacaatattagaggaccgatcgagttggacgtttcgttggttagatctgctgaacaaattatggatagtttgaaccgacccatgat 7563447  T
Q  357 ctacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgatctgtg 419  Q
    |||||||||||| ||||||||||| ||  ||||| | |||||||||||||||| |||||||||    
T  7563448 ctacgaagagatcagggcactcctagaaccaccagacgaagaaattaatttagatgatctgtg 7563510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 237 - 415
Target Start/End: Original strand, 30517105 - 30517283
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    ||||||||||||||| ||||   |||||||||| ||||||||||||||| ||||||||||||||||||| ||||| |||| || |||||||||||  |||    
T  30517105 cgacgtgagaaccatcttctatgtctttggtcaatacagtactagaggatcgatcgagttggacgcttcattggttagatctgctgaacaaattctgaaa 30517204  T
Q  337 agtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgatc 415  Q
    | ||||| | |||||| ||||||||||||||| | ||| || ||||| | |||| |||| || |||| ||||| |||||    
T  30517205 aatttgaaccgacccaggaactacgaagagatcacggctctgctggagggaccagatgacgatattagtttaggtgatc 30517283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 33 - 241
Target Start/End: Complemental strand, 41368127 - 41367920
Alignment:
Q  33 agtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaa 132  Q
    ||||||||||||| ||| |||||||  ||||||||||| ||||| || | ||||| ||||||||| | ||||| || ||||| ||  |||||||| | ||    
T  41368127 agtttactacaacaggg-gaaaccaccccatctattcatgattcgcaatgatgtcaccctctctgggttgaagagttagctgaataaaatcaacctcgaa 41368029  T
Q  133 ctcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatga 232  Q
    |||||||| ||||||||||| ||||| |||||||||| |||||  | | |||||| | |||| || ||| ||||||||||||| |||||||| || ||||    
T  41368028 ctcaactacagagacacacgaagggtagatggtgttgtgtatcgtcgttcatcgaccaactctgctaggggtgtgcggttcactcggatgaaactcatga 41367929  T
Q  233 acggcgacg 241  Q
    ||| |||||    
T  41367928 acgacgacg 41367920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 260 - 368
Target Start/End: Complemental strand, 18277859 - 18277751
Alignment:
Q  260 tctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaacta 359  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| || |||||||||||  |||||||||  | || ||| ||||||    
T  18277859 tctttggtcagcacagtacaagaggaccgatcgagttggacgcttcgttggttagatctgctgaacaaattctgaaaagtttgcaccgaaccaggaacta 18277760  T
Q  360 cgaagagat 368  Q
    |||||||||    
T  18277759 cgaagagat 18277751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 237 - 368
Target Start/End: Original strand, 22334224 - 22334355
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    ||||||| ||||||| ||||   ||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||| || |||||||||||  |||    
T  22334224 cgacgtgcgaaccatgttctatgtctttggtcagcacagtacaagaggaccgatcgagttggacgcttcgttggttagatctgctgaacaaattctgaaa 22334323  T
Q  337 agtttgatctgacccaagaactacgaagagat 368  Q
    ||||||  | |  ||| |||||||||||||||    
T  22334324 agtttgcaccggaccatgaactacgaagagat 22334355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 238 - 331
Target Start/End: Original strand, 17384671 - 17384763
Alignment:
Q  238 gacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattc 331  Q
    |||||||||||||| ||||   |||| |||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  17384671 gacgtgagaaccatgttctctgtctt-ggtcagcacagtactagaggaccgaccgagttggacgcttcgttggttagatatgttgaacaaattc 17384763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 211 - 331
Target Start/End: Original strand, 7198772 - 7198892
Alignment:
Q  211 ttcacccggatgaagcttatgaacggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttgg 310  Q
    |||| ||||||||| || | ||||| ||||||| ||||||| ||||  |||||||||| | ||||||| |||||||| ||||||||||||||||||||||    
T  7198772 ttcagccggatgaaactcaagaacgacgacgtgcgaaccattttctctatctttggtctgcacagtacaagaggaccaatcgagttggacgcttcgttgg 7198871  T
Q  311 tcagatatgttgaacaaattc 331  Q
    | |||| || |||||||||||    
T  7198872 ttagatctgctgaacaaattc 7198892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 323
Target Start/End: Complemental strand, 11355722 - 11355413
Alignment:
Q  17 acatcaagctagttacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctgga 116  Q
    ||||| |||||||| ||||||||||||||  ||| ||| ||  |||||| |||| |||||||||| || |  | || || |   |||||| ||  |||||    
T  11355722 acatctagctagttgcagtttactacaacatggaaaaatcaccccatctgttcatgattcacactgatataacgctatccgaattgaaggatcgcctgga 11355623  T
Q  117 tcgaatcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacc 216  Q
    || ||||||||| ||||||||| | ||||| ||| ||||| |||||| ||||||||||| || |||||||||||| || |     | ||| ||||||| |    
T  11355622 tcaaatcaaccgtcaactcaaccacagagatacaaggaggatggatgatgttgagtatcgacgtccatcgatcgattctgtcgaaactgttcggttcagc 11355523  T
Q  217 cggatgaagct---tatgaacggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtca 313  Q
    |||||||||||    |  |||  |||| ||||||||||||||| ||| |||||||| |||| || || |||| ||||||| || |||||||| ||| |||    
T  11355522 cggatgaagctcaaaaacaacaacgacatgagaaccatattctcgatatttggtcaatacaatagtaaaggatcgatcgaatttgacgcttcattgatca 11355423  T
Q  314 gatatgttga 323  Q
    ||||||||||    
T  11355422 gatatgttga 11355413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 237 - 383
Target Start/End: Complemental strand, 4852726 - 4852580
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    ||||||||||||||| ||||   ||||||||||| ||| ||| |||||| ||||||||||||||||||||||||| |||| || | |||||||||  |||    
T  4852726 cgacgtgagaaccatgttctctgtctttggtcagcacattacaagaggatcgatcgagttggacgcttcgttggttagatctgctaaacaaattctgaaa 4852627  T
Q  337 agtttgatctgacccaagaactacgaagagattagggcactcctgga 383  Q
    ||||||  | |  ||| |||||||||||||||| |||| || |||||    
T  4852626 agtttgcaccggaccatgaactacgaagagattcgggctctgctgga 4852580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 83 - 342
Target Start/End: Original strand, 10221853 - 10222115
Alignment:
Q  83 atgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatcc 182  Q
    ||||| ||||||| | |||||||| | ||||||||| ||||||||| ||||||||| | | ||||||  |||||||||  || ||||| |||| |  |||    
T  10221853 atgtcaccctctccgggctgaaggatgagctggatcaaatcaaccgtcaactcaaccacaaagacacgaggagggtggtcggggttgaatatcgatgtcc 10221952  T
Q  183 atcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatgaacg---gcgacgtgagaaccatattcttgatctttggtcagtacagtact 279  Q
    || |  |||||||||  |   | | || |||| ||||||||| || | |||||   |||||||| ||||||| ||||   ||||||||||| |||||||     
T  10221953 attgtccgactcagccggatctcttcgcttcagccggatgaaactcaagaacgacggcgacgtgcgaaccatgttctctgtctttggtcagcacagtaca 10222052  T
Q  280 agaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttg 342  Q
    ||||||| ||||||||||||||||| |||||| |||| || ||||||||| |  |||||||||    
T  10222053 agaggactgatcgagttggacgctttgttggttagatctgatgaacaaatactaaaaagtttg 10222115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 260 - 383
Target Start/End: Complemental strand, 39599554 - 39599431
Alignment:
Q  260 tctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaacta 359  Q
    ||||||||||| ||||||| | |||||| || |||||||||||||||||||| |||| ||||||||||||||  |||| ||||  |||  ||| ||||||    
T  39599554 tctttggtcagcacagtacaaaaggaccaatagagttggacgcttcgttggttagatctgttgaacaaattctgaaaattttgcactggaccaggaacta 39599455  T
Q  360 cgaagagattagggcactcctgga 383  Q
    |||||||||| |||| || |||||    
T  39599454 cgaagagattcgggctctgctgga 39599431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 238 - 330
Target Start/End: Original strand, 10311465 - 10311557
Alignment:
Q  238 gacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaatt 330  Q
    |||||| ||||||| |||||  ||||||||||  ||||||| |||||||||||||||||||| ||||||||||| |||| || ||||||||||    
T  10311465 gacgtgtgaaccatgttctttgtctttggtcaacacagtacaagaggaccgatcgagttggatgcttcgttggttagatctgctgaacaaatt 10311557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 211 - 342
Target Start/End: Original strand, 5748592 - 5748723
Alignment:
Q  211 ttcacccggatgaagcttatgaacggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttgg 310  Q
    |||| ||||||||| || | ||||| ||| ||| ||||||| ||||   | |||| |||| | ||||| |||||||||||||||||||||||||||||||    
T  5748592 ttcagccggatgaaactcaagaacgacgatgtgcgaaccatgttctacgtgtttgttcagcatagtacaagaggaccgatcgagttggacgcttcgttgg 5748691  T
Q  311 tcagatatgttgaacaaattcataaaagtttg 342  Q
    | |||| || |||||||||||  |||||||||    
T  5748692 ttagatctgctgaacaaattcggaaaagtttg 5748723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 347
Target Start/End: Original strand, 35988796 - 35988877
Alignment:
Q  266 gtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctg 347  Q
    |||||||||||| || |||| ||||| ||||||| | || |||||| |||||||||||| ||||||| ||||||||||||||    
T  35988796 gtcagtacagtattaaaggatcgatcaagttggatgttttgttggttagatatgttgaagaaattcagaaaagtttgatctg 35988877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 132 - 311
Target Start/End: Complemental strand, 43075159 - 43074978
Alignment:
Q  132 actcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatg 231  Q
    ||||||| | |||||||||  ||||||||  ||||||  ||||| || |||||| ||||||||||| || ||  | | ||||||||  |||||||| |||    
T  43075159 actcaaccacagagacacaaagagggtgggcggtgttatgtatcgacgtccatcaatcgactcagctagaagcatccagttcacccatatgaagctcatg 43075060  T
Q  232 aacggc--gacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggt 311  Q
    |||  |  |||||||||||||| |||| ||| ||| ||||||| ||| | | | |||| ||||||||||||||||| |||||    
T  43075059 aacaacacgacgtgagaaccatgttctcgatatttagtcagtatagttcgaaatgaccaatcgagttggacgcttccttggt 43074978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 15248507 - 15248432
Alignment:
Q  110 agctggatcgaatcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatc 185  Q
    |||| |||| ||||||||| ||| ||||| | ||||| ||| |||||||||||| ||||||||||| |||||||||    
T  15248507 agctagatcaaatcaaccgtcaattcaaccacagagatacaaggagggtggatgatgttgagtatcgacatccatc 15248432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 30516925 - 30517025
Alignment:
Q  60 ccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtg 159  Q
    |||||| || ||||||||||   ||||| |||||||   ||| |||| ||||||||||| ||||||| ||||||||||| | ||||||||  ||||||||    
T  30516925 ccatctgtttaggattcacaacgatgtcaccctctccaggctaaaggatcagctggatcaaatcaactgccaactcaaccacagagacacgaggagggtg 30517024  T
Q  160 g 160  Q
    |    
T  30517025 g 30517025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 184
Target Start/End: Complemental strand, 15500019 - 15499936
Alignment:
Q  101 tgaagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccat 184  Q
    |||||| | ||||| ||| ||||||||| ||||||||| | | ||||||  |||||||||| ||||||||||||| || |||||    
T  15500019 tgaaggattagctgcatcaaatcaaccgtcaactcaaccacaaagacactaggagggtggacggtgttgagtatcgacgtccat 15499936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 7492894 - 7492947
Alignment:
Q  142 agagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactca 195  Q
    ||||||||| ||||| ||||  ||||||||||||||||| |||||||| |||||    
T  7492894 agagacacaaggaggatggacagtgttgagtatcaacattcatcgatcaactca 7492947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 360
Target Start/End: Complemental strand, 15248286 - 15248254
Alignment:
Q  328 attcataaaagtttgatctgacccaagaactac 360  Q
    ||||||||||||||||||||| |||||||||||    
T  15248286 attcataaaagtttgatctgaaccaagaactac 15248254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 116; Significance: 8e-59; HSPs: 3)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 161 - 419
Target Start/End: Complemental strand, 55081 - 54820
Alignment:
Q  161 atggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatga---acggcgacgtgagaaccatattctt 257  Q
    |||||||||||||||||  |||||||| ||||||| |  |||||||| ||| || ||||||  |||| ||||   ||| ||||||||| ||||| |||||    
T  55081 atggtgttgagtatcaatgtccatcgaccgactcaaccgggagtgtgtggtccagccggatatagctcatgagcgacgacgacgtgaggaccatgttctt 54982  T
Q  258 gatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaac 357  Q
    |||||||||||||||||||| ||||||  | ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||| || ||||    
T  54981 gatctttggtcagtacagtaatagagggtcaatcgagttggacgcttcattggtcagatatgttgaacaaattcagaaaagtttgatccgacgcaggaac 54882  T
Q  358 tacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgatctgtg 419  Q
    ||||||||||| ||||||||  || | |||||| | ||||| |||||||||| |||||||||    
T  54881 tacgaagagatcagggcactaatgaatgcaccacacgaagacattaatttagatgatctgtg 54820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 161 - 327
Target Start/End: Original strand, 86963 - 87132
Alignment:
Q  161 atggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatgaacggcgac---gtgagaaccatattctt 257  Q
    ||||||||||||||| |  || ||||| ||||||||   |||||| | |||||| ||||||  |||| ||||||| ||||   ||||||||||| |||||    
T  86963 atggtgttgagtatcgatttcaatcgaccgactcaggcgggagtgcgtggttcagccggatatagctcatgaacgacgacgacgtgagaaccatgttctt 87062  T
Q  258 gatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaa 327  Q
    ||| |||||||||||||||||||||||  | ||| ||||||||||||| |||||||||| ||||||||||    
T  87063 gatatttggtcagtacagtactagagggtcaatcaagttggacgcttcattggtcagatgtgttgaacaa 87132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 86815 - 86909
Alignment:
Q  17 acatcaagctagttacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcag 111  Q
    |||||||||||| | ||||| ||||||| |||| |||||||  |||| | |||||||||| | || ||| | ||||||||| | |||||||||||    
T  86815 acatcaagctagctgcagttcactacaatggggggaaaccaccccatgtgttcaggattccctctgatggcaccctctctgagttgaagggtcag 86909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 1e-57; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 101 - 409
Target Start/End: Complemental strand, 20819995 - 20819684
Alignment:
Q  101 tgaagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaag 200  Q
    ||||| |||||||| ||| |||||| | | |||||||||| | ||||| ||| ||| ||||||||||||| ||||||||||| |||| |||||||    |    
T  20819995 tgaagagtcagctgaatcaaatcaatctcaaactcaactacaaagacaaacgaaggatggatggtgttgattatcaacatccgtcgaccgactcactcgg 20819896  T
Q  201 gagtgtgcggttcacccggatgaagcttatgaacggcgacg---tgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttg 297  Q
    ||||||||||||||||| ||||||||| ||||||| |||||   |||||| ||| ||||| ||||||||  ||| |||||||||||  ||||||||||||    
T  20819895 gagtgtgcggttcacccagatgaagctcatgaacgacgacggcgtgagaaacatgttcttcatctttggctagttcagtactagagagccgatcgagttg 20819796  T
Q  298 gacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaag 397  Q
    ||||||||||||||||||| ||||||||| |||||  ||||||||||| | || | ||||||||||||||| ||||| ||  ||||| ||| | | ||||    
T  20819795 gacgcttcgttggtcagatctgttgaacatattcaacaaagtttgatccggccaaggaactacgaagagatcagggctctaatggacacacaacacgaag 20819696  T
Q  398 aaattaatttag 409  Q
    | ||||||||||    
T  20819695 atattaatttag 20819684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 103 - 368
Target Start/End: Complemental strand, 19626800 - 19626535
Alignment:
Q  103 aagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaagga 202  Q
    |||||||| ||| |||||||||| | | |||||||||| |||||||||| |||| ||||||||||  |||||| || |   |||| |||||||     ||    
T  19626800 aagggtcaactgaatcgaatcaatctcgaactcaactacagagacacacagaggatggatggtgtatagtatcgacgtttgtcgaccgactcaatcgaga 19626701  T
Q  203 gtgtgcggttcacccggatgaagcttatgaacggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgc 302  Q
    ||||||| || |  | ||||||||| ||||| | ||||||||||||||| |||| |||| |||||| |||||||||||||||  ||||||||||||||||    
T  19626700 gtgtgcgttttagacagatgaagctcatgaatgacgacgtgagaaccatgttctcgatcattggtctgtacagtactagagggtcgatcgagttggacgc 19626601  T
Q  303 ttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagat 368  Q
    |||||||||||||| |||||||||||||||||||||||||||| | || | |||||||||||||||    
T  19626600 ttcgttggtcagatctgttgaacaaattcataaaagtttgatccggcctaggaactacgaagagat 19626535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 60 - 415
Target Start/End: Original strand, 20386669 - 20387027
Alignment:
Q  60 ccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtg 159  Q
    |||| ||||||||| || |||| ||||| | ||||| | | |||||| |||||| |||| ||||||||| ||||||||| | ||||||||| |||| |||    
T  20386669 ccatgtattcaggactctcactgatgtcacgctctccgggttgaaggatcagctagatcaaatcaaccgtcaactcaaccatagagacacaaggagagtg 20386768  T
Q  160 gatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatgaacggcgac---gtgagaaccatattct 256  Q
    || | | ||||||||| |  ||||||||  |||||||   | | ||||||||||  ||||||||| ||    |||| ||||   ||||||||||| ||||    
T  20386769 gacgatcttgagtatcgatgtccatcgactgactcagttggaactgtgcggttcggccggatgaatctcggaaacgacgacgacgtgagaaccatgttct 20386868  T
Q  257 tgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaa 356  Q
     |||||||||| |||||| ||| | ||||||||||||||||||||||||||||   | || ||||||||||||| | |||| ||||||| | |||| |||    
T  20386869 cgatctttggttagtacattaccaaaggaccgatcgagttggacgcttcgttgtgaaaatctgttgaacaaattaagaaaaatttgatccgtcccaggaa 20386968  T
Q  357 ctacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgatc 415  Q
    |||||||||||| |||||||| ||||| |||||| ||||||| |||| ||||| |||||    
T  20386969 ctacgaagagatcagggcactgctggatgcaccagatgaagacattagtttagctgatc 20387027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 237 - 419
Target Start/End: Complemental strand, 17521097 - 17520915
Alignment:
Q  237 cgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaa 336  Q
    ||||||||||||||| |||| |||||||| |||||||||||||||| | |||||||||||||| |||||||||||||||| ||||||| |  || | |||    
T  17521097 cgacgtgagaaccatgttctcgatctttgttcagtacagtactagacggccgatcgagttggatgcttcgttggtcagatctgttgaaaatttttagaaa 17520998  T
Q  337 agtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgatctgtg 419  Q
    ||||||||||| |||| ||||||||||||||| ||||||||| |||| |||||||| ||||| | |||||||| |||| ||||    
T  17520997 agtttgatctggcccatgaactacgaagagatcagggcactcatggatgcaccataggaagacaataatttagctgatatgtg 17520915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 202 - 419
Target Start/End: Complemental strand, 25173086 - 25172866
Alignment:
Q  202 agtgtgcggttcacccggatgaagcttatgaa---cggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttgg 298  Q
    ||||||||||| | |||||||||||| |||||   || |||||||||||| || |||| ||||||||||||||| | ||||||||| ||| |||||||||    
T  25173086 agtgtgcggttaagccggatgaagctcatgaatgacgacgacgtgagaacgatgttctcgatctttggtcagtataatactagagggccggtcgagttgg 25172987  T
Q  299 acgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaaga 398  Q
    |||| ||||||||||||||||||||||| |||||  ||| ||||||  | || | ||||||||||||||| ||||||||  |||||| || | |||||||    
T  25172986 acgcatcgttggtcagatatgttgaacatattcaacaaactttgattcggccaaggaactacgaagagatcagggcactaatggacgtactagatgaaga 25172887  T
Q  399 aattaatttagttgatctgtg 419  Q
     |||||||||| |||||||||    
T  25172886 cattaatttagatgatctgtg 25172866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 83 - 368
Target Start/End: Complemental strand, 13038434 - 13038146
Alignment:
Q  83 atgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatcc 182  Q
    ||||| ||||||| | |||||||| | ||||||||| | ||||||| ||||||||| | | ||||||  |||||||||  || ||||| |||| |  |||    
T  13038434 atgtcaccctctccgggctgaaggatgagctggatcaattcaaccgtcaactcaaccacaaagacacgaggagggtggtcggagttgaatatcgatgtcc 13038335  T
Q  183 atcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatgaacggcgacg---tgagaaccatattcttgatctttggtcagtacagtact 279  Q
    || |  ||||||||| ||   | | || |||| ||||||||| || | |||||||||||   || ||||||||||||   ||||||||||| |||||||     
T  13038334 attgtccgactcagccagatctcttcgcttcagccggatgaaactcaagaacggcgacgacgtgcgaaccatattctctgtctttggtcagcacagtaca 13038235  T
Q  280 agaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagat 368  Q
    |||||||||||||||||||||||||||||||| |||| || |||||||||||  |||||||||  | |  ||| |||||||||||||||    
T  13038234 agaggaccgatcgagttggacgcttcgttggttagatctgctgaacaaattctgaaaagtttgcaccggaccaggaactacgaagagat 13038146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 25176626 - 25176451
Alignment:
Q  21 caagctagttacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcga 120  Q
    |||||||||| |||||||||||||  ||| |||||||  |||||| |||||||||| |||| ||||| | | ||||| | ||||| |||||||| ||| |    
T  25176626 caagctagttgcagtttactacaattggg-gaaaccaccccatctgttcaggattcccactaatgtcacgcactctgggttgaagagtcagctgaatcaa 25176528  T
Q  121 atcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagc 197  Q
    ||||||| | |||||||||  ||||||| | |||||||||| |||||| |||||| || ||| ||||  ||||||||    
T  25176527 atcaacctcaaactcaacttcagagacaaatggagggtggacggtgtttagtatcgacgtccgtcgactgactcagc 25176451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 17521296 - 17521131
Alignment:
Q  21 caagctagttacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcga 120  Q
    |||||||| | || ||||||||||||||| |||||||  |||||| |||||||||  || | ||||| |||| ||   | | |||||||||||||| |      
T  17521296 caagctagctgcaatttactacaacgggg-gaaaccaccccatctgttcaggatttgcattgatgtcaccctatccaagttaaagggtcagctggaacat 17521198  T
Q  121 atcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcga 187  Q
     |||| |||||||||||||| | ||||||||||||||||||| |||||||||||| || ||||||||    
T  17521197 gtcaatcgccaactcaactacaaagacacacggagggtggattgtgttgagtatcgacgtccatcga 17521131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 284 - 368
Target Start/End: Complemental strand, 34950194 - 34950110
Alignment:
Q  284 gaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagat 368  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||  |||||||||  |||  ||| |||||||||||||||    
T  34950194 gaccgatcgagttggacgcttcgttggttagatatgctgaacaaattctgaaaagtttgcactggaccaggaactacgaagagat 34950110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 29436254 - 29436172
Alignment:
Q  260 tctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttg 342  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||   |||| |||| || |||||||||||  |||||||||    
T  29436254 tctttggtcagcacagtacaagaggaccgatcgagttggacgctttcatggttagatctgctgaacaaattctgaaaagtttg 29436172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 32420191 - 32420244
Alignment:
Q  144 agacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagc 197  Q
    ||||||| ||||| ||||| |||||||||||| | ||||||||| |||||||||    
T  32420191 agacacaaggaggatggattgtgttgagtatcgatatccatcgaccgactcagc 32420244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 197
Target Start/End: Original strand, 32426032 - 32426085
Alignment:
Q  144 agacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagc 197  Q
    ||||||| ||||| ||||| |||||||||||| | ||||||||| |||||||||    
T  32426032 agacacaaggaggatggattgtgttgagtatcgatatccatcgaccgactcagc 32426085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 295 - 419
Target Start/End: Original strand, 12304071 - 12304195
Alignment:
Q  295 ttggacgcttcgttggtcagatatgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatg 394  Q
    |||||| ||||  |||| |||| || |||||||||  | |||| ||||||| | |||| ||||||||||||||| ||||| || ||||| | |||| | |    
T  12304071 ttggacacttctgtggttagatctgctgaacaaataaaaaaaaatttgatccggcccaggaactacgaagagatcagggctctgctggagggaccagagg 12304170  T
Q  395 aagaaattaatttagttgatctgtg 419  Q
    ||||| ||| ||||| | |||||||    
T  12304171 aagaagttagtttagattatctgtg 12304195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 21 - 419
Target Start/End: Original strand, 6818 - 7218
Alignment:
Q  21 caagctagttacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcga 120  Q
    |||||||||| | ||| |||||||||||| |||||||  ||||||||||||||||| |||| ||||| ||||||| | | |||||||||||||  ||| |    
T  6818 caagctagttgctgttaactacaacggggggaaaccaccccatctattcaggattcccactgatgtcaccctctccg-gttgaagggtcagctaaatcaa 6916  T
Q  121 atcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccgga 220  Q
    ||||||| | |||||||||| |||||||| ||||  |||||| || ||||||||| || ||  ||||  ||||||    ||||||||||||||| | |||    
T  6917 atcaacctcgaactcaactacagagacacgcggatcgtggattgtattgagtatcgacgtctgtcgactgactcaatcgggagtgtgcggttcatctgga 7016  T
Q  221 tgaagcttatgaacggcgacg---tgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagata 317  Q
    ||||||| ||||||| ||| |   |||||||||| |||| |||||||||| ||||||||| ||||||  |||||| |||||||||||  |||||  |||     
T  7017 tgaagctcatgaacgacgaggatgtgagaaccatgttctcgatctttggttagtacagtattagagggtcgatcgtgttggacgcttgcttggtatgatc 7116  T
Q  318 tgttgaacaaattcataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcaccatatgaagaaattaatttagttgatctg 417  Q
     |||||||| |||||  |||||||||||   ||||| |||||||||||||| | |  |||  ||||||||||| | ||||| |||||||||| |||| ||    
T  7117 cgttgaacatattcaacaaagtttgatccagcccaaaaactacgaagagatcatgaaactaatggacgcaccacacgaagacattaatttagatgatttg 7216  T
Q  418 tg 419  Q
    ||    
T  7217 tg 7218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 34 - 388
Target Start/End: Original strand, 61586 - 61942
Alignment:
Q  34 gtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaac 133  Q
    ||||||||||||||||| ||||||  |||||| |||||||||| |||| || || ||| ||| | | ||||| |||||||| ||  |||||||| | |||    
T  61586 gtttactacaacggggaaaaaccaccccatctgttcaggattcgcactgatatcacccactccgggttgaagagtcagctgaatgaaatcaacctcgaac 61685  T
Q  134 tcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatga- 232  Q
    |||||   |||||||||| ||||||||||||||||||||||| || |||  | | ||||||| | |||||| || ||||||  | ||||||||| ||||     
T  61686 tcaaccgcagagacacacagagggtggatggtgttgagtatcgacgtccgccaaccgactcatctaggagtctgtggttcagtctgatgaagctcatgaa 61785  T
Q  233 --acggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaatt 330  Q
      ||| ||||||||||||||| ||||  || |||  |||||||| ||| ||||| |||||||||||||| ||||| | || ||||| |||||||| ||||    
T  61786 cgacgacgacgtgagaaccatgttctccat-ttttttcagtacaatacaagagggccgatcgagttggatgcttcttgggccagatctgttgaacgaatt 61884  T
Q  331 cataaaagtttgatctgacccaagaactacgaagagattagggcactcctggacgcac 388  Q
    |  |||||||||||| | || | ||||||||||||||| |||||||| ||||| ||||    
T  61885 cgaaaaagtttgatccggcctaggaactacgaagagatcagggcactactggaagcac 61942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 368
Target Start/End: Original strand, 17582 - 17916
Alignment:
Q  30 tacagtttactacaacggggagaaaccaatccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgc 129  Q
    |||||||||||||||| | | |||||||  |||| | |||| |||||||| | ||||  ||||||| | | ||||| ||| |||| ||  |||||||| |    
T  17582 tacagtttactacaacagagggaaaccaccccatttgttcatgattcacaatgatgtgaccctctccgggttgaagagtcggctgaattaaatcaacctc 17681  T
Q  130 caactcaactaaagagacacacggagggtggatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagctta 229  Q
     |||| ||||| |||||||||| |||| |  ||||||||||||||| || |||||||| ||||| | |  ||||||||| |||||||||||||||||| |    
T  17682 gaactgaactacagagacacacagaggatatatggtgttgagtatcgacgtccatcgaccgactaatccgggagtgtgcagttcacccggatgaagctca 17781  T
Q  230 tga---acggcgacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaaca 326  Q
    |||   | | |||||||| ||       ||  |||||||| |||| ||||||||||||  ||||||||||||| ||||||||||||| || |||||||||    
T  17782 tgaatgatgacgacgtgataa-------ctccatctttggccagttcagtactagagggtcgatcgagttggatgcttcgttggtcaaatctgttgaaca 17874  T
Q  327 aattcataaaagtttgatctgacccaagaactacgaagagat 368  Q
     ||||   ||||||||||| | |  | |||||||||||||||    
T  17875 tattcgataaagtttgatccggcgaaggaactacgaagagat 17916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 60 - 233
Target Start/End: Original strand, 36884 - 37057
Alignment:
Q  60 ccatctattcaggattcacacttatgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtg 159  Q
    ||||||||||| ||||| || | ||||| ||||||| | | ||||| || ||||| ||  |||||||| | |||||||||| |||||||||||||||||     
T  36884 ccatctattcatgattcgcaatgatgtcaccctctccgggttgaagagttagctgaataaaatcaacctcgaactcaactatagagacacacggagggta 36983  T
Q  160 gatggtgttgagtatcaacatccatcgatcgactcagcaaggagtgtgcggttcacccggatgaagcttatgaa 233  Q
    |||||||||| |||||  | | |||||| | ||||||| ||| ||||||||||||||||||||||||| |||||    
T  36984 gatggtgttgtgtatcgtcgttcatcgaccaactcagctaggggtgtgcggttcacccggatgaagctcatgaa 37057  T

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Target: scaffold0168 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 238 - 368
Target Start/End: Complemental strand, 16858 - 16728
Alignment:
Q  238 gacgtgagaaccatattcttgatctttggtcagtacagtactagaggaccgatcgagttggacgcttcgttggtcagatatgttgaacaaattcataaaa 337  Q
    |||||| ||||||| ||||   ||||||||||| ||||||| |||||||| ||||||||||||||||| ||||| |||| || |||||||||||  ||||    
T  16858 gacgtgcgaaccatgttctctgtctttggtcagcacagtacaagaggaccaatcgagttggacgcttcattggttagatctgctgaacaaattctgaaaa 16759  T
Q  338 gtttgatctgacccaagaactacgaagagat 368  Q
    |||||  | |  ||| |||||||||||||||    
T  16758 gtttgcaccggaccaggaactacgaagagat 16728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 83 - 182
Target Start/End: Original strand, 7467 - 7566
Alignment:
Q  83 atgtcgccctctctgtgctgaagggtcagctggatcgaatcaaccgccaactcaactaaagagacacacggagggtggatggtgttgagtatcaacatcc 182  Q
    ||||| ||||||| | | ||||||||||| || ||| |||||||| | ||||||| || |||||||||||||||||||||| ||||||||||| ||||||    
T  7467 atgtcaccctctccgggttgaagggtcagttgaatcaaatcaacctcaaactcaagtatagagacacacggagggtggatgatgttgagtatcgacatcc 7566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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