View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12731_low_3 (Length: 446)
Name: NF12731_low_3
Description: NF12731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12731_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 22857139 - 22856707
Alignment:
| Q |
1 |
tcatgtattattcttttgtaagtaatccatttcctcattaattgcttgtacccactttggatctgttaagacttcttgtattctactaggaacatggaag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22857139 |
tcatgtattattcttttgtaagtaatccatttcctcattaattgcttgtacccactttggatctgttaagacttcttgtattctactaggaacatggaag |
22857040 |
T |
|
| Q |
101 |
gaggacaaagtatgcacaaaagctttaacaggttctgataatttatgagtagatacataattagcaattggatattttgacattttcttctcaaaatata |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
22857039 |
gaggacaaagtatgcacaaaagctttaacaggttctgataatttatgagtagatacataattagcaattggatattttgacattttcttctcaaaatcta |
22856940 |
T |
|
| Q |
201 |
gggagtaccgcttaggtggcttaccacgactctgtctaaaaggtaagttgtaacggacaaatgtatctaaatcatttatacgaggatatggagtaggaat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22856939 |
gggagtaccgcttaggtggcttaccacgactctgtctaaaaggtaagttgtaacggacagatgtatctaaatcatttatacgaggatatggagtaggaat |
22856840 |
T |
|
| Q |
301 |
atttacctcaggacaattctcaagagatgggtcatcatgtactaagaagtgagttgatgatttgacttattttcaatttcagcttctagttcaacaactt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22856839 |
atttacctcaggacaattctcaagagatgggtcatcatgtactaagaagtgagttgatgatttgacttattttcaatttcagcttctagttcaacaactt |
22856740 |
T |
|
| Q |
401 |
gtgtcgcactacaatcattcacttttctctgct |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
22856739 |
gtgtcgcactacaatcattcacttttctctgct |
22856707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 4 - 433
Target Start/End: Original strand, 10672495 - 10672927
Alignment:
| Q |
4 |
tgtattattcttttgtaagtaatccatttcctcattaattgcttgtacccactttggatctgttaagacttcttgt-attctactaggaacatggaagga |
102 |
Q |
| |
|
|||||||||||| | |||| |||||||||||||||||||||||||| ||| | | ||| | ||||| ||| || | |||| | |||||| ||| |||| |
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|
| T |
10672495 |
tgtattattcttctataaggcatccatttcctcattaattgcttgtatccagtctagatattttaaggctttttattattccattaggaa-atgatagga |
10672593 |
T |
|
| Q |
103 |
ggacaaagtatgcacaaaagctttaacaggttctgataatttatgagtagatacataattagcaattggatattttgacattttcttctcaaaatatagg |
202 |
Q |
| |
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||| ||| ||||| ||| |||||||| ||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| | || |
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| T |
10672594 |
ggataaattatgcttaaattctttaacatattctgataatttatgagtagatacaaacttttcaattggatattttgacattttcttctcaaaatttggg |
10672693 |
T |
|
| Q |
203 |
gagtaccgcttaggtggcttaccacgactctgtctaaaaggtaagttgtaacggacaaatgtatctaaatcatttatacgaggatatggagtaggaatat |
302 |
Q |
| |
|
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||| |||||||||| | ||||| |||||| ||||| |||||| ||||| |
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|
| T |
10672694 |
gagtaccgcttacgtggcttaacacgattctgtctaaaaggtaagttgtaacgaacaaatgtatttgaatcaattatacagggataaggagtaagaatac |
10672793 |
T |
|
| Q |
303 |
ttacctcaggacaattctcaagagatgggtcatcatgtactaagaagtgagt---tgatgatttgacttattttcaatttcagcttctagttcaacaact |
399 |
Q |
| |
|
|||||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||| | ||| ||||||| |
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|
| T |
10672794 |
ttacctcaagacaattctcaaaagatgggtcatcatgtactaagaagtgtgggggtgatgatttgacttattttcaatttcaacttttggttaaacaact |
10672893 |
T |
|
| Q |
400 |
tgtgtcgcactacaatcattcacttttctctgct |
433 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| |
|
|
| T |
10672894 |
tgtgtcgcacaacaatcattcctttttctctgct |
10672927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 2 - 433
Target Start/End: Original strand, 523963 - 524398
Alignment:
| Q |
2 |
catgtattattcttttgtaagtaatccatttcctcattaattgcttgtacccactttggatctgttaagacttcttgtattctactaggaacatggaagg |
101 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||| |
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|
| T |
523963 |
catgtattattcttttgtaaggcatccatttcttcattaattgcttgtacccactttggatctgttaaggcttcttgtattccactaggaacatgaaagg |
524062 |
T |
|
| Q |
102 |
aggacaaagtatgcacaaaagctttaacaggttctgataatttatgagtagatacataattagcaattggatattttgacattttcttctcaaaatatag |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
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|
| T |
524063 |
aggacaaagtatgcacaaaagctttaacaggttctgataatttatgagtagatacataattagcaattggatattttgacattttcttctcaaaatctgg |
524162 |
T |
|
| Q |
202 |
ggagtaccgcttaggtggcttaccacgactctgtctaaaaggtaagttgtaacggacaaatgtatctaaatcatttatacgaggatatggagtaggaata |
301 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
524163 |
ggagtaccgcttaggtggcttaccacgattctgtctaaaaggtaagttgtaacggacagatgtatctaaatcatttatacaaggatatggagtaggaata |
524262 |
T |
|
| Q |
302 |
tttacctcaggacaattctcaagagatgggtcatcatgtactaagaagtgagt----tgatgatttgacttattttcaatttcagcttctagttcaacaa |
397 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
524263 |
cttacctcaggataattctcaggagatgggtcatcatgtactaagaagtgaggggggtgataatttgactcattttcaatttcagcttctggttcaacaa |
524362 |
T |
|
| Q |
398 |
cttgtgtcgcactacaatcattcacttttctctgct |
433 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |
|
|
| T |
524363 |
cttgtgtcgcactacaatccttcacttttctctgct |
524398 |
T |
|
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