View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12731_low_4 (Length: 439)
Name: NF12731_low_4
Description: NF12731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12731_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 423
Target Start/End: Complemental strand, 47293481 - 47293098
Alignment:
| Q |
17 |
ctgtgcaacctcttccatcttgtctatggtcattgatctggaaagagcctcattatctcgaaatcgtatatacatatgacgtgctctctcggcaaatgcc |
116 |
Q |
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| T |
47293481 |
ctgtgcaacctcttccatcttgtctatggtcattgatctggaaagagccgcata------------tatatacatatgacgtgctctctcggcaaatgcc |
47293394 |
T |
|
| Q |
117 |
tctgtatcagcggtgtggtacttgtaacttgtaagtaccccaacttgtaaattcttcccactcaatcaatttatacatattctcaagactaaagattccc |
216 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47293393 |
tctgtatcagcggtgtggtacttgtaa-------gtaccccaacttgtaaattcttcccactcaatcaatttatacatattctcaagactaaagattccc |
47293301 |
T |
|
| Q |
217 |
aggtccactccaattgaaccagttaaggtaagattttctgcaacaataactcctgcgcgcgcccattgccacgtagtatcctgcgcccattgctcgatca |
316 |
Q |
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| T |
47293300 |
aggtccactccaattgaaccagttaaggtaagattttctgcaacaataactcctgcgc----ccattgccacgtagtatcctgcgcccattgctcgatca |
47293205 |
T |
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| Q |
317 |
gcgaagcaataattggtattttttcagcaagagacctgatttaatttctgtccacattgaatcagagtactcaatattgcccccgaactgtcaattccga |
416 |
Q |
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| T |
47293204 |
gcgaagcaataattggtattttttcagcaagagacctgatttaatttctgtccacattgaatcagagtactcaatattgcccccgaactgtcaattcgga |
47293105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 56208651 - 56208739
Alignment:
| Q |
17 |
ctgtgcaacctcttccatcttgtctatggtcattgatctggaaagagcctcattatctcgaaatcgtatatacatatgacgtgctctct |
105 |
Q |
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| T |
56208651 |
ctgtgcaacctcttccatctcatctatagtcattgatctggaaagagccgcattatctcgaaattgtttataaatatgttgtgctctct |
56208739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 221 - 298
Target Start/End: Original strand, 45878663 - 45878736
Alignment:
| Q |
221 |
ccactccaattgaaccagttaaggtaagattttctgcaacaataactcctgcgcgcgcccattgccacgtagtatcct |
298 |
Q |
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| T |
45878663 |
ccactccaattgaaccagttaaggttagactttctgcaacaatagctcct----gctcccattgccatgtagtatcct |
45878736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 56208877 - 56208915
Alignment:
| Q |
234 |
accagttaaggtaagattttctgcaacaataactcctgc |
272 |
Q |
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| T |
56208877 |
accagttaaggtaagattttctgcaacaataactcctgc |
56208915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 55705902 - 55705858
Alignment:
| Q |
21 |
gcaacctcttccatcttgtctatggtcattgatctggaaagagcc |
65 |
Q |
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| T |
55705902 |
gcaacctcttccatcttgtctatagtcatagatctggaaagagcc |
55705858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 212 - 358
Target Start/End: Original strand, 7972399 - 7972545
Alignment:
| Q |
212 |
ttcccaggtccactccaattgaaccagttaaggtaagattttctgcaacaataactcctgcgcgcgcccattgccacgtagtatcctgcgcccattgctc |
311 |
Q |
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| T |
7972399 |
ttcccaagtccactccaattgaaccagttaaggtaaggttttctgcaacaataactcct----gcgcccattgccatgtagtatcctgcgctcattgcca |
7972494 |
T |
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| Q |
312 |
gatcag----cgaagcaataattggtattttttcagcaagagacctgattt |
358 |
Q |
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|||||| | ||||||||| |||| |||| ||||||||||||||||| |
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| T |
7972495 |
gatcagacatcaaagcaataactggttttttggaagcaagagacctgattt |
7972545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 7972196 - 7972271
Alignment:
| Q |
17 |
ctgtgcaacctcttccatcttgtctatggtcattgatctggaaagagcctcattatctcgaaatcgtatatacata |
92 |
Q |
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| T |
7972196 |
ctgtgcaacctcttccatcttgtctacagtcattgatctggaaagatccacatcatctcgaaattgtttatacata |
7972271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 7961827 - 7961898
Alignment:
| Q |
18 |
tgtgcaacctcttccatcttgtctatggtcattgatctggaaagagcctcattatctcgaaatcgtatatac |
89 |
Q |
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| T |
7961827 |
tgtgcaacctcttccatcttgtctatagtcattaatcttgaaagagccgcatcatctcgaaattgtttatac |
7961898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 219 - 267
Target Start/End: Original strand, 7962048 - 7962096
Alignment:
| Q |
219 |
gtccactccaattgaaccagttaaggtaagattttctgcaacaataact |
267 |
Q |
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|||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
7962048 |
gtccaccccaattgaaccagttaaggtaagattttccgcaacaataact |
7962096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 24354117 - 24354076
Alignment:
| Q |
223 |
actccaattgaaccagttaaggtaagattttctgcaacaata |
264 |
Q |
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| T |
24354117 |
actccaattgaaccagttaaggtaagactttctgcaacaata |
24354076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 35802699 - 35802767
Alignment:
| Q |
228 |
aattgaaccagttaaggtaagattttctgcaacaataactcctgcgcgcgcccattgccacgtagtatcctgc |
300 |
Q |
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| T |
35802699 |
aattgaaccagttaaagtaagattttctgctacgatagctcct----gctcccattgccatgtagtatcctgc |
35802767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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