View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12731_low_9 (Length: 270)
Name: NF12731_low_9
Description: NF12731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12731_low_9 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 270
Target Start/End: Original strand, 20352505 - 20352760
Alignment:
| Q |
15 |
cagagagggaaagttcattcaatcaaataaaggaacagtcattcctttcagaaaggaatagtgcatcttcgtatctattctctagagaatcagtctaatt |
114 |
Q |
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| T |
20352505 |
cagaaagggaaagttcattcaatcaaataaaggaacagtcattcctttcagaaaggaacagtgcatcttcatatctattctctagagaatcagtctaatt |
20352604 |
T |
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| Q |
115 |
gttattttacctttatatattttcaaaccagtaattatcctgatatctattttcaaaccagtaatcatcctgatattaaaaaataaaacctaaaatccaa |
214 |
Q |
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| T |
20352605 |
gttattttacctttatatattttcaaaccagtaattatcctgatatctattttcaaaccagtaatcatcctgatattaaaaaataaaacctaaaatccat |
20352704 |
T |
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| Q |
215 |
caatcatgctttattgagtcttgaactctattctctgaatctatttgtattgattt |
270 |
Q |
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| T |
20352705 |
caatcatgctttattgagtcttgaactctattctctgaatctatttgtattgattt |
20352760 |
T |
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