View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12732_high_1 (Length: 413)
Name: NF12732_high_1
Description: NF12732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12732_high_1 |
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| [»] scaffold0160 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 24 - 304
Target Start/End: Original strand, 9545952 - 9546232
Alignment:
| Q |
24 |
gctgatgctgatccgaatccaatattatgtgttctcctatgtccacctagtgcttgacctgaagaaaattctctaaaacaaattggacattcatgaattt |
123 |
Q |
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| T |
9545952 |
gctgatgctgatccgaatccaatattatgtgttctcctatgtccacctagtgcttgacctgaagcaaattctctaaaacaaattggacattcatgaattt |
9546051 |
T |
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| Q |
124 |
tcttttcagtaacattgatannnnnnncaatgttaattttttcatgttgttgtgaaattgaataatcaccaccactttctgcaacttgtttatttttctt |
223 |
Q |
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| T |
9546052 |
tcttttcactaacattgatatttttttcaatgttaattttttcatgatgttgtgaaattgaataatcaccaccactttctgcaacttgtttatttttctt |
9546151 |
T |
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| Q |
224 |
gtgactcgctctgtgtccacctagtgcttgatatgaacgaaacactttgttacacgtgtcgcatttgtatcttcctcgtac |
304 |
Q |
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| T |
9546152 |
gtgactcgctctgtgtccacctagtgcttgatatgaacgaaacactttgttacacgtgtcgcatttgtatcttcctcgtac |
9546232 |
T |
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Target: scaffold0160 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 19594 - 19675
Alignment:
| Q |
50 |
atgtgttctcctatgtccacctagtgcttgacctgaagaaaattctctaaaacaaattggacattcatgaattttcttttca |
131 |
Q |
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| T |
19594 |
atgtgttcttttgtgtccaccaagtgcttgacccgaattaaatactcgaaaacataccggacattcatgaactttcttttca |
19675 |
T |
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