View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12732_low_10 (Length: 202)
Name: NF12732_low_10
Description: NF12732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12732_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 19 - 184
Target Start/End: Original strand, 4775404 - 4775554
Alignment:
| Q |
19 |
gtgtggccatatatacatataatacaatgatgaattatgctaaaatcatggaacagtcaactatactaattggctatttactatgggatatgatttccat |
118 |
Q |
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| T |
4775404 |
gtgtggccatatatacatataatacaatgatgaattatgctaaaatcatggaacagtcaactatact---------------atgggatatgatttccat |
4775488 |
T |
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| Q |
119 |
ttacagatattattacaaccattattctttgatttggtcaatgcttaagttaatactcctacacgc |
184 |
Q |
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| T |
4775489 |
ttacagatattattacaaccattattctttgatttggtcaatgcttaagttaatactcctacacgc |
4775554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 181
Target Start/End: Original strand, 448512 - 448677
Alignment:
| Q |
19 |
gtgtggccatatatacatataatacaatgatgaattatgctaaaatcatggaacagtcaactatactaattggctatttactatgggatatgatttccat |
118 |
Q |
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| T |
448512 |
gtgtagccatatatacatggaatacaatgatgaatattgctcaaatcatggaacagtcaactatactaattggctagttactataagatatgatttccat |
448611 |
T |
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| Q |
119 |
ttacagatattattacaaccattattctttgatttggtcaatgc---ttaagttaatactcctaca |
181 |
Q |
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| T |
448612 |
ttactgatattattacacccatcattatttgatttggtcaatgctaattaagttaatactcctaca |
448677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 108 - 184
Target Start/End: Original strand, 43060836 - 43060912
Alignment:
| Q |
108 |
atgatttccatttacagatattattacaaccattattctttgatttggtcaatgcttaagttaatactcctacacgc |
184 |
Q |
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| T |
43060836 |
atgatttccatttactgatatcattacaaccattgttatttgatttggtaaatgcttaagttaatactcctacacgc |
43060912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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