View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12732_low_3 (Length: 289)
Name: NF12732_low_3
Description: NF12732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12732_low_3 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 8e-98; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 18 - 209
Target Start/End: Complemental strand, 42169463 - 42169271
Alignment:
| Q |
18 |
gtgtagccatggattatt-attacctatggtgagtttcagctatacccatcatagtaagataatggctgaaagcacgagcaagagtgaaagcttcttcta |
116 |
Q |
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| T |
42169463 |
gtgtagccatggattatttattacctatggtgagtttcagctatacccatcatagtaagataatggctgaaagcacgagcaagagtgaaagcttcttcta |
42169364 |
T |
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| Q |
117 |
atgacatctttgacaactctgaagctaactgcttctcaagtaactcagccatgttcactatacctgcttgcctcatattgcatgcactctgcc |
209 |
Q |
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| T |
42169363 |
atgacatctttgacaaatctgaagctaactgcttctcaagtaactcagccatgttcactatacctgcttgcctcatattgcatgcactctgcc |
42169271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 42169253 - 42169212
Alignment:
| Q |
227 |
tagaaacatcattcactagcactcacttatcaaaggcgtgtc |
268 |
Q |
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| T |
42169253 |
tagaaacatcattcactattactcacttatgaaaggcgtgtc |
42169212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 21686047 - 21686150
Alignment:
| Q |
106 |
agcttcttctaatgacatctttgacaactctgaagctaactgcttctcaagtaactcagccatgttcactatacctgcttgcctcatattgcatgcactc |
205 |
Q |
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| T |
21686047 |
agcttcttctaaagacatctttgacaactctgaagctaactgcttctcaattaactcagccatgttcactatacctgcttgcctcatattacatccactc |
21686146 |
T |
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| Q |
206 |
tgcc |
209 |
Q |
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| T |
21686147 |
tgcc |
21686150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 7725551 - 7725600
Alignment:
| Q |
33 |
attattacctatggtgagtttcagctatacccatcatagtaagataatgg |
82 |
Q |
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| T |
7725551 |
attattacctatggtgagtttcagctatatcagtcacagtaagataatgg |
7725600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 333947 - 333841
Alignment:
| Q |
47 |
tgagtttcagctatacccatcatagtaagataatggctgaaagcacgagcaagagtgaaagcttcttctaatgacatctttgacaactctgaagctaact |
146 |
Q |
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| T |
333947 |
tgagtttcagctatgctcatcatagtaagatagtgactgaatgcacgagcaagtgtttgagcttcttctaagttcatcttggataactctgaagccaact |
333848 |
T |
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| Q |
147 |
gcttctc |
153 |
Q |
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| T |
333847 |
gcttctc |
333841 |
T |
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