View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12732_low_4 (Length: 261)
Name: NF12732_low_4
Description: NF12732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12732_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 131; Significance: 5e-68; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 85 - 243
Target Start/End: Original strand, 31797184 - 31797342
Alignment:
| Q |
85 |
aattggtcatttgtcatggcatgtttcaatcctgaaacgggggagtatcaaagtgtatgccgagttatctttgggttcaccgtctctttttacataagac |
184 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
31797184 |
aattggtcatttgtcatggcacgtttcaatcctgaaacgggggagtatcaaggtgtatgccgagttatgtttgggttcaccgtctctttttacataagac |
31797283 |
T |
|
| Q |
185 |
atacaagtagttttgacatatcctttgaaatattctgggcatgctaatcatgtatccat |
243 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31797284 |
gtacaagtagttttgacaactcctttgaaatattctgagcatgctaatcatgtatccat |
31797342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 31791048 - 31791191
Alignment:
| Q |
92 |
catttgtcatggcatgtttcaatcctgaaacgggggagtatcaaagtgtatgccgagttatctttgggttcaccgtctctttttacataagacatacaag |
191 |
Q |
| |
|
||||| ||||||||||||||||||||||||| | |||||||||||||| |||||||| || | ||||||||| | |||||||||||| || |||||| |
|
|
| T |
31791048 |
catttctcatggcatgtttcaatcctgaaactgaagagtatcaaagtgtgtgccgagtaatgtctgggttcacagactctttttacatt-gaggtacaag |
31791146 |
T |
|
| Q |
192 |
tagttttgacatatcctttgaaatattctgggcatgctaatcatg |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31791147 |
tagttttgacatatcctttgaaatattctgggcatgctaatcatg |
31791191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 31797083 - 31797155
Alignment:
| Q |
16 |
tgaagtactgtttacaagttactgggttttcctttctgcctaagacgaaagtgtatgcatctggtcacaaatt |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31797083 |
tgaagtactgtttacaagttactgggttttcctttctgcctaagacgaaagtgtatgcatctggtcacaaatt |
31797155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 31789819 - 31789883
Alignment:
| Q |
16 |
tgaagtactgtttacaagttactgggttttcctttctgcctaagacgaaagtgtatgcatctggt |
80 |
Q |
| |
|
||||||||||||| || |||||||||||| ||| || |||||||||||||||||||||||||||| |
|
|
| T |
31789819 |
tgaagtactgtttgcaggttactgggtttccctctccgcctaagacgaaagtgtatgcatctggt |
31789883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 31799810 - 31799861
Alignment:
| Q |
189 |
aagtagttttgacatatcctttgaaatattctgggcatgctaatcatgtatc |
240 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||||||| |||| ||||||| |
|
|
| T |
31799810 |
aagtagttttgacatatcctttaaaatactatgggcatgttaattatgtatc |
31799861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 31804266 - 31804302
Alignment:
| Q |
52 |
tgcctaagacgaaagtgtatgcatctggtcacaaatt |
88 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
31804266 |
tgcctaagaagaaagtgtatgcatctggtcaccaatt |
31804302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University