View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12732_low_5 (Length: 249)
Name: NF12732_low_5
Description: NF12732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12732_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 58 - 213
Target Start/End: Original strand, 493041 - 493196
Alignment:
| Q |
58 |
atatatatgagtatttagcccacctaatttgcaatcggagagaattgaatgtgagattttgaggaggagcacattcaaaagtctcaagccaacatccgcg |
157 |
Q |
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| T |
493041 |
atatatatgagtatttagcccacctaatttgcaatcggagagaattgaatgtgagattttgaggaggagcacattctaaagtctcaagccaatatccgcc |
493140 |
T |
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| Q |
158 |
tcaattgccaacccaagtggtttacggtaacaataattctaatgacttcctcccct |
213 |
Q |
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| T |
493141 |
tcaattgccaacccaagtggtttacggtaacaataattctaatgacttcctcccct |
493196 |
T |
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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 492829 - 492867
Alignment:
| Q |
1 |
ttttatcataaaaagaattaaaaatttactttatttgta |
39 |
Q |
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| T |
492829 |
ttttatcataaaaagaattaaaaatttactttatttgta |
492867 |
T |
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