View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12732_low_9 (Length: 224)
Name: NF12732_low_9
Description: NF12732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12732_low_9 |
 | |
|
| [»] scaffold0288 (2 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 4661402 - 4661232
Alignment:
| Q |
15 |
agcaaaggagtgtccaacatcaattaagggtgcaaagatatcaaacatggaatttaaagaagataatgctctgatttcatacatgaaagggttcatacca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4661402 |
agcaaaggagtgtccaacatcaattaagggtgcaaagatatcaaacatggaatttaaagaagataatgctctgatttcatacatgaaagggttcatacca |
4661303 |
T |
|
| Q |
115 |
tgattgtaaatcaagagttttgttccgaatttgaaagagacttattattatgcatttgttttataagtgcattt |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
4661302 |
tgattgtaaatcaagagttttgttccgaatttgaaaaagactta---ttatgcattagttttataagtgcattt |
4661232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 4661093 - 4661061
Alignment:
| Q |
171 |
tgttttataagtgcatttatttatagaacaatg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
4661093 |
tgttttataagtgcatttatttatagaacaatg |
4661061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 188
Target Start/End: Complemental strand, 21572 - 21403
Alignment:
| Q |
15 |
agcaaaggagtgtccaacatcaattaagggtgcaaagatatcaaacatggaatttaaagaagataatgctctgatttcatacatgaaagggttcatacca |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21572 |
agcaaaggagtgtccaacatcaattaagggtgcaaagatatcaaacatggaatttaaagaagataatgctctgatttcatacatgaaagggttcatacca |
21473 |
T |
|
| Q |
115 |
tgattgtaaatcaagagttttgttccgaatttgaaagagacttattattatgcatttgttttataagtgcattt |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||| |
|
|
| T |
21472 |
tgattgtaaatcaagagttttgttccgaatttgaaa-agac---ttattatgcattagttttataagtgcattt |
21403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 21260 - 21228
Alignment:
| Q |
171 |
tgttttataagtgcatttatttatagaacaatg |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
21260 |
tgttttataagtgcatttatttatagaacaatg |
21228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 49319308 - 49319402
Alignment:
| Q |
17 |
caaaggagtgtccaacatcaattaagggtgcaaagatatcaaacatggaatttaaagaagataatgctctgatttcatacatgaaagggttcata |
111 |
Q |
| |
|
||||| ||||||||||||||||||||||||| | ||||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
49319308 |
caaagaagtgtccaacatcaattaagggtgctatgatatcaaacatggaatttgaagaagagtatgctctgatttcatacatgaaggggttcata |
49319402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 49324177 - 49324257
Alignment:
| Q |
124 |
atcaagagttttgttccgaatttgaaagagacttattattatgcatttgttttataagtgcattta----tttatagaacaatg |
203 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||| | |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
49324177 |
atcaagagttttgttccgaatcggaaagacacttattat---gtatttgttttataagtgcatttaattatttatagaacaatg |
49324257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University