View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12733_high_3 (Length: 642)
Name: NF12733_high_3
Description: NF12733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12733_high_3 |
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| [»] scaffold0735 (2 HSPs) |
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| [»] scaffold0224 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 281 - 633
Target Start/End: Complemental strand, 42923571 - 42923219
Alignment:
| Q |
281 |
ctgcaagtagtgcaggaagggggtggcagaatgcacaaaaccaatacaaatgaatgaaaattctgacaataggattcccactcttgttccttccaaacac |
380 |
Q |
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| T |
42923571 |
ctgcaagtagtgcaggaagggggtggcagaatgcacaaaaccaatacaaatgaatgaaaattctgacaataggattcccactcttgttccttccaaacac |
42923472 |
T |
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| Q |
381 |
tccatacgataaagcttcccattaccatttttaatccactgtttttctctttctcttcttaatcttttaccaatttctacatacaaggaaatccacccaa |
480 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42923471 |
tccatacgataaagcttcccattaccatttttaatccactgtttttctctttctcttcttaatcttttaccaatttctacatacaaggaaatccacccaa |
42923372 |
T |
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| Q |
481 |
ccaaattcatccaacaattctgctctcaattgtactactcttccttttttgactctcatttcttctcaccacatgcataaagtgttctttgtttaaggaa |
580 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42923371 |
ccaaattcatccaacaattctgctctcaattgtactactcttccttttttgactctcatttcttctcaccacatgcataaagtgttctttgtttaaggaa |
42923272 |
T |
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| Q |
581 |
aatgttttgtatattgtttaatataagcattgtacgttcaatcatgtctgtgc |
633 |
Q |
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| T |
42923271 |
aatgttttgtatattgtttaatataagcattgtacgttcaatcatgtctgtgc |
42923219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 42923733 - 42923637
Alignment:
| Q |
119 |
cgaaaagaatgctataaataatagtaaaaaggaaagttgcacagaatttagagaactcagtaatattggagtagaatcttaccgtgagagacagttt |
215 |
Q |
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| T |
42923733 |
cgaaaagaatgctataaataatagtaaaaaggaaagttgcacagaatttagagaactcagtaatattggagtagaatcttaccgtgagagacagttt |
42923637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 5657118 - 5657055
Alignment:
| Q |
28 |
ttgaaaattgaattattaaactttttgaataaataacttctttatttagaaattttaaagagtg |
91 |
Q |
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| T |
5657118 |
ttgaaaatgaaattgtttaactttttgaaaaaataacttctttatttaaaaactttaaagagtg |
5657055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 32 - 100
Target Start/End: Complemental strand, 37348415 - 37348347
Alignment:
| Q |
32 |
aaattgaattattaaactttttgaataaataacttctttatttagaaattttaaagagtgacctaaaga |
100 |
Q |
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| T |
37348415 |
aaattgaattatttaattttttgaatgaataaattttttatttaaaaaccttaaagtgtgacttaaaga |
37348347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0735 (Bit Score: 240; Significance: 1e-132; HSPs: 2)
Name: scaffold0735
Description:
Target: scaffold0735; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 281 - 559
Target Start/End: Complemental strand, 5303 - 5024
Alignment:
| Q |
281 |
ctgcaagtagtgcaggaagggggtggcagaatgcacaaaaccaatacaaatgaatgaaaattctgacaataggattcccactcttgttccttccaaacac |
380 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5303 |
ctgcaagtagtgcaggaagggggtggcacaatgcacaaaaccaatacaaatgaatgaaaattctgacaataggattcccactcttgttccttccaaacaa |
5204 |
T |
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| Q |
381 |
tccatacgataaagcttcccattaccatttttaatccactgtttttctctttctcttcttaatcttttaccaatttctacatacaaggaaatccacccaa |
480 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5203 |
tccatacgataaagcttcccattaccatttttactccactgtttttctctctctcttcttaatctttcaccaatttctacatacaaggaaatccacccaa |
5104 |
T |
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| Q |
481 |
ccaaattcatccaacaa-ttctgctctcaattgtactactcttccttttttgactctcatttcttctcaccacatgcata |
559 |
Q |
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| T |
5103 |
ccaaattcatccaacaacctctcctctcaattgtactactcttccttttttgactctcatctcttctcaccacatgcata |
5024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0735; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 119 - 215
Target Start/End: Complemental strand, 5465 - 5369
Alignment:
| Q |
119 |
cgaaaagaatgctataaataatagtaaaaaggaaagttgcacagaatttagagaactcagtaatattggagtagaatcttaccgtgagagacagttt |
215 |
Q |
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| T |
5465 |
cgaaaagaatgctataaataatagtaaaaaggaaagttgcacagaatttagagaactcagtaatattggagtagaatcttaccgtgagagacagttt |
5369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0224 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 399 - 633
Target Start/End: Original strand, 14880 - 15111
Alignment:
| Q |
399 |
ccattaccatttttaatccactgtttttctctttctcttcttaatcttttaccaatttctacatacaaggaaatccacccaaccaaattcatccaacaat |
498 |
Q |
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||||||||||||| ||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14880 |
ccattaccatttt-aatccaccgtttt-ctctttctcttct-aatcttttaccaatttctacatacaaggaaatccacccaaccaaattcatccaacaat |
14976 |
T |
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| Q |
499 |
tctgctctcaattgtactactcttccttttttgactctcatttcttctcaccacatgcataaagtgttctttgtttaaggaaaatgttttgtatattgtt |
598 |
Q |
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| T |
14977 |
tctgctctcaattgtactactcttccttttttgactctcatttcttctcaccacatgcataaagtgttctttgtttaaggaaaatgttttgtatattgtt |
15076 |
T |
|
| Q |
599 |
taatataagcattgtacgttcaatcatgtctgtgc |
633 |
Q |
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| T |
15077 |
taatataagcattgtacgttcaatcatgtctgtgc |
15111 |
T |
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