View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12733_high_4 (Length: 588)
Name: NF12733_high_4
Description: NF12733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12733_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 540; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 15 - 570
Target Start/End: Original strand, 32728779 - 32729334
Alignment:
| Q |
15 |
atgaagcaagaagtgtacaaaattacaatggcacatggtacatacatatatataattagcaaatattatttggctctcacttccagttattggcaacaat |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32728779 |
atgaagcaagaagtgtacaaaattacaatggcacatggtacatacatatatataattagcaaatattattcggctctcacttccagttattggcaacaat |
32728878 |
T |
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| Q |
115 |
gtcagccaaatcaacaaccctttgtgagtaaccccattcattatcataccaagcaatcaccttaaccatgtcatctcccataaccattgtcaatgacgaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32728879 |
gtcagccaaatcaacaaccctttgtgagtaaccccattcattatcataccaagcaatcaccttaaccatgtcatctcccataaccattgtcaatgacgaa |
32728978 |
T |
|
| Q |
215 |
tccacggttgaggacacatcagtgcacctaaaatctacagacacaagtggctcatcacaaactgagagaataccactcagctccttggctgcactgtctc |
314 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32728979 |
tcgacggttgaggacacatcagtgcacctaaaatctacagacacaagtggctcatcacaaactgagagaataccactcagctccttggctgcactgtctc |
32729078 |
T |
|
| Q |
315 |
tgaaagcctcattcacttcttcagcaaatgtcttctttgagacttgaacaacgaggtccaccaccgaaacgtttggtgttggcacacggagtgcaatacc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32729079 |
tgaaagcctcattcacttcttcagcaaatgtcttctttgagacttgaacaacgaggtccaccaccgaaacatttggtgttggcacacggagtgcaatacc |
32729178 |
T |
|
| Q |
415 |
gttgagcttgcctttgagtgatgggaggacaagggccactgcctttgctgctccggttgaagttggcacaatgttaagagctgctgctcttgcacgcctt |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32729179 |
gttgagcttgcctttgagtgatgggaggacaagggccactgcctttgctgctccggttgaagttggcacaatgttaagagctgctgctcttgcacgcctt |
32729278 |
T |
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| Q |
515 |
agatcacggtggctagcatcaagaagcctttggtcaccggtgtaagagtgagtggt |
570 |
Q |
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| T |
32729279 |
agatcacggtggctagcatcaagaagcctttggtcaccggtgtaggagtgagtggt |
32729334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 142 - 273
Target Start/End: Original strand, 54181164 - 54181295
Alignment:
| Q |
142 |
gtaaccccattcattatcataccaagcaatcaccttaaccatgtcatctcccataaccattgtcaatgacgaatccacggttgaggacacatcagtgcac |
241 |
Q |
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||||||||||||||| ||||||||||||| |||||| ||||| ||||||||||| ||||| ||||| || || || | ||||| || ||||| ||||| |
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| T |
54181164 |
gtaaccccattcattgtcataccaagcaaccaccttgaccatatcatctcccatgaccatagtcaaggaagagtcaatagttgaagaaacatcggtgcag |
54181263 |
T |
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| Q |
242 |
ctaaaatctacagacacaagtggctcatcaca |
273 |
Q |
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| T |
54181264 |
cggaagtcaacagacacaagtggaacatcaca |
54181295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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